PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_22690V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

S1Fa-like

Protein Properties

Length: 97aa MW: 10606.8 Da PI: 10.5764

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_22690V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	114.1	6.1e-36	32	96	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + + GlnPGlivl+vv g l+vflvgn+ ly yaqknlP +kkkPvskkklk+eklk Gv +PG+ Pp3c14_22690V3.3.p 32 ETSSGLNPGLIVLIVVLGSLVVFLVGNFFLYQYAQKNLPAKKKKPVSKKKLKKEKLKAGVRPPGD 96 3459***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.1E-32	33	96	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MRIRFLPVAT CSNHLSLCNE LIVCGLEQRD VETSSGLNPG LIVLIVVLGS LVVFLVGNFF 60 LYQYAQKNLP AKKKKPVSKK KLKKEKLKAG VRPPGD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.5635	1e-115	protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393659.1	1e-40	DNA-binding protein S1FA-like
TrEMBL	A0A2K1JIX2	3e-39	A0A2K1JIX2_PHYPA; Uncharacterized protein
STRING	PP1S34_425V6.1	5e-40	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5095	13	22

Link Out ? help Back to Top
Phytozome	Pp3c14_22690V3.3.p