PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_23220V3.1.p

Common Name

PHYPADRAFT_78046

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 702aa MW: 77662.5 Da PI: 7.7295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_23220V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	661	682	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C ++F +++L++H+r H Pp3c14_23220V3.1.p 661 ECSICRRTF-KPDSLQVHMRGcH 682 5******.********955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	1.0E-34	11	178	IPR010369	Protein of unknown function DUF966
Pfam	PF13913	2.0E-6	659	681	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MAFEENFLSA QVLYQLSWNG KLEHPHIIDV EYASDQGGLR LRDVKERLTR LRGHGINDSF 60 SWSYKRTYSK TFIWNDLSDD DVIHPLCGSG EYVLRASELI DTNERKSCDV HSRHSNKSMQ 120 SSPTMLLDNV TSKQDTIIGD VHFGALESGE NRRIGDKLNC LVRNSGANLE EVKSLRGVSA 180 VISQSLPTLY ADQEIMDVEK SDFCLSSSDT EISPRPKMTV DSIKPVKDVN LVVMTKSSTV 240 HGVHTPPSPS LKSSTELPFS PGGTKRLWEK EIRKSLFRTR NSSNVNSVST EDFTAVHMEL 300 PPNTHSTHED NSFWRDSRSK SPSPSSLNEL KEVQIDKEEV EQSTSQLIRL LWARWTGGSS 360 KGKRIPYNTC EGASTKIPES KHNSPYRTKS PYKEIRSTHV EGSHQETRQS LAVQSKARVS 420 LEIKEILPPE ECMHYPSPMT VQNVTEVASP HAQTDGGGDV CTIKTIVSEQ ASQPYPEPRD 480 LRTDQGILSE KTPGLHIAVL EGLTSDAPSG PAEAEVDTPL PAVARAKTGN TLSKLKTIAS 540 SKPLPPGFHK GTNDTKPVQI TPRRTPRNSI PLASPPLVRS FSRDAVRGFS SLAAISLCPD 600 KDSVACTPSP EKTIVKKRIN YSAREEMPLV PGLTTLDWEK ALQEATTDCL PPPNFSDILQ 660 ECSICRRTFK PDSLQVHMRG CHPPQYARAF SARASPHVVR C*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MAFEENFLSA QVLYQLSWNG KLEHPHIIDV EYASDQGGLR LRDVKERLTR LRGHGINDSF  60
SWSYKRTYSK TFIWNDLSDD DVIHPLCGSG EYVLRASELI DTNERKSCDV HSRHSNKSMQ  120
SSPTMLLDNV TSKQDTIIGD VHFGALESGE NRRIGDKLNC LVRNSGANLE EVKSLRGVSA  180
VISQSLPTLY ADQEIMDVEK SDFCLSSSDT EISPRPKMTV DSIKPVKDVN LVVMTKSSTV  240
HGVHTPPSPS LKSSTELPFS PGGTKRLWEK EIRKSLFRTR NSSNVNSVST EDFTAVHMEL  300
PPNTHSTHED NSFWRDSRSK SPSPSSLNEL KEVQIDKEEV EQSTSQLIRL LWARWTGGSS  360
KGKRIPYNTC EGASTKIPES KHNSPYRTKS PYKEIRSTHV EGSHQETRQS LAVQSKARVS  420
LEIKEILPPE ECMHYPSPMT VQNVTEVASP HAQTDGGGDV CTIKTIVSEQ ASQPYPEPRD  480
LRTDQGILSE KTPGLHIAVL EGLTSDAPSG PAEAEVDTPL PAVARAKTGN TLSKLKTIAS  540
SKPLPPGFHK GTNDTKPVQI TPRRTPRNSI PLASPPLVRS FSRDAVRGFS SLAAISLCPD  600
KDSVACTPSP EKTIVKKRIN YSAREEMPLV PGLTTLDWEK ALQEATTDCL PPPNFSDILQ  660
ECSICRRTFK PDSLQVHMRG CHPPQYARAF SARASPHVVR C*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393643.1	0.0	uncharacterized protein LOC112290978
TrEMBL	A0A2K1JJ00	0.0	A0A2K1JJ00_PHYPA; Uncharacterized protein
STRING	PP1S69_3V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP645	2	4

Link Out ? help Back to Top
Phytozome	Pp3c14_23220V3.1.p
Entrez Gene	5927772

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]