PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c14_24020V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 82aa    MW: 9200.95 Da    PI: 8.7705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c14_24020V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-069481255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        RR++i +++  L+ l+P +    s+   Ka +Le+ ++Y+ksLq
  Pp3c14_24020V3.4.p  9 RREKISNRMKFLQALVPGC----SEVTGKAVMLEEIINYVKSLQ 48
                        9*****************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.798147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-13965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-7952No hitNo description
Gene3DG3DSA:4.10.280.101.1E-121065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MMSAWVEARR EKISNRMKFL QALVPGCSEV TGKAVMLEEI INYVKSLQRQ IEFLSMKLAA  60
VDPRVDTNVE GLLKMEVCAV R*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024393823.13e-53transcription factor bHLH49-like
RefseqXP_024393825.13e-53transcription factor bHLH49-like
RefseqXP_024393826.13e-53transcription factor bHLH49-like
RefseqXP_024393827.13e-53transcription factor bHLH49-like
SwissprotQ9CAA91e-30BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2K1JJ398e-52A0A2K1JJ39_PHYPA; Uncharacterized protein
STRINGPP1S69_90V6.11e-52(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]