PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c14_24440V3.1.p

Common Name

PHYPADRAFT_128310

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bZIP

Protein Properties

Length: 126aa MW: 14500.5 Da PI: 9.9134

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c14_24440V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	93	124	6	37
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvke 37 r++r+++NRe ArrsR+RK++ ++eL+ + Pp3c14_24440V3.1.p 93 RQKRMISNRELARRSRLRKQQHLDELRSQISH 124 89************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-7	90	124	No hit	No description
PROSITE profile	PS50217	8.68	90	125	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.05E-7	93	124	No hit	No description
CDD	cd14702	8.59E-14	93	125	No hit	No description
Pfam	PF00170	3.8E-7	93	124	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MYVFPCIPVF WKRRILHRPC FIPTTPCDCA GARLGLNLNQ SELSGLSRHS CEEISKKVHD 60 NGGETHSSPR NKEPKVQSNH TFDDDQLVIS EGRQKRMISN RELARRSRLR KQQHLDELRS 120 QISHL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	RRSRLRK
2	104	111	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11061	1e-103	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392804.1	1e-48	basic leucine zipper 63-like
Refseq	XP_024392805.1	1e-48	basic leucine zipper 63-like
Refseq	XP_024392806.1	1e-48	basic leucine zipper 63-like
Refseq	XP_024392808.1	1e-48	basic leucine zipper 63-like
TrEMBL	A9SE26	5e-88	A9SE26_PHYPA; Predicted protein
STRING	PP1S69_141V6.1	9e-89	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	2e-12	basic leucine-zipper 3

Link Out ? help Back to Top
Phytozome	Pp3c14_24440V3.1.p
Entrez Gene	5927847

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]