PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_11920V3.16.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 356aa    MW: 39004.9 Da    PI: 9.0857
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_11920V3.16.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.8e-1161101444
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                          +k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++
  Pp3c15_11920V3.16.p  61 SKVLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQE 101
                          7999*************************865555544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-858106No hitNo description
SMARTSM003380.002558111IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.16360104IPR004827Basic-leucine zipper domain
PfamPF001701.0E-762102IPR004827Basic-leucine zipper domain
CDDcd147085.31E-2162115No hitNo description
SuperFamilySSF579593.38E-762106No hitNo description
PROSITE patternPS0003606580IPR004827Basic-leucine zipper domain
PfamPF141442.3E-33155230IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEKSGKRYSR KVCGIIKMGD NSASARTDSS SDMDGDAKHL ASGGGNSNDS SLETGTKNGD  60
SKVLRRLAQN REAARKSRLR KKAYVQQLES SRIKLNQLEQ ELQRTRQQQG LYLGPGSYSD  120
QNGQSGGVGG ANAYSSGAAA FDLEYARWVE DHTRQMSELR VALQAHVADA DLRLLVDGSM  180
AHYDDLFRLK DAAAKADVFH LVSGMWKTPA ERCFVWIGGC RPSELLKILV PQIEPLTEQQ  240
LLNICNLQQS SQQGEEALSQ GMEQLQQSLA ETLSAGSLGS AANVANYMGQ MAVAMGQLGN  300
LEGFVRQADH LRQQTLQQMH RVLTIRQVAR GLLAMGDYFA RLRALSSLWS ARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.104890.0protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397444.10.0transcription factor TGA2.2-like
SwissprotO241601e-149TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2K1JCW20.0A0A2K1JCW2_PHYPA; Uncharacterized protein
STRINGPP1S258_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-125TGACG motif-binding factor 6