PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_12420V3.3.p

Common Name

PHYPADRAFT_170746

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 250aa MW: 27421.6 Da PI: 4.4924

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_12420V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	41.6	2.1e-13	52	164	49	163
FLO_LFY 49 releelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaek 127 +l+ +f ++G+r tv ki+e+Gft++tL+ d el l++s+ + + l +Ge +Gik a a++ +l++ e Pp3c15_12420V3.3.p 52 IDLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE---- 133 4799************************98654.7888888888754..3668******9..667777775555443333331.... PP FLO_LFY 128 krrkllsedeetaldal.sqeglseepvqeekeaags 163 sed+ + + + s+e+++ ep ++ +++++ Pp3c15_12420V3.3.p 134 ------SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 164 ......4444443333313444444554443333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	1.5E-7	53	114	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MLASLDLSQS WQEGVNGFSE TLLSGAGVFD CLNSSAKVIG VPWKDGIIMA SIDLDTFFDG 60 FGLRPETVFK IKEMGFTAKT LMSNVDELPS LLESINQHHL LTLGEEWGIK GAAKKWQLDQ 120 TYAPHPEDEK WPESEDTCKE VACIDSEEVT QLEPCSKWMQ QQQQGQQLPS SHNHLGPSNL 180 TGSNLSPSNQ GVSDVGPGGS PGRVGYYTNL LSYQSQGNAR FDIMREVDVT SQRQPQIKHS 240 FDHVVGTTF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396205.1	1e-151	uncharacterized protein LOC112292190
TrEMBL	A9TLG9	1e-160	A9TLG9_PHYPA; Predicted protein
STRING	PP1S258_46V6.1	1e-134	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c15_12420V3.3.p
Entrez Gene	5942673

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]