PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_12420V3.4.p

Common Name

PHYPADRAFT_170746

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 202aa MW: 22397.8 Da PI: 4.6595

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_12420V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	41.6	2.2e-13	5	116	50	163
FLO_LFY 50 eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrlee............eeaekk 128 +l+ +f ++G+r tv ki+e+Gft++tL+ d el l++s+ + + l +Ge +Gik a a++ +l++ e Pp3c15_12420V3.4.p 5 DLDTFFDGFGLRPETVFKIKEMGFTAKTLMSNVD-ELPSLLESINQHH--LLTLGEEWGIKGA--AKKWQLDQtyaphpedekwpE----- 85 6899***********************98654.7888888888754..3668******9..667777775555443333331..... PP FLO_LFY 129 rrkllsedeetaldal.sqeglseepvqeekeaags 163 sed+ + + + s+e+++ ep ++ +++++ Pp3c15_12420V3.4.p 86 -----SEDTCKEVACIdSEEVTQLEPCSKWMQQQQQ 116 .....4444443333313444444554443333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	1.3E-7	6	66	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MASIDLDTFF DGFGLRPETV FKIKEMGFTA KTLMSNVDEL PSLLESINQH HLLTLGEEWG 60 IKGAAKKWQL DQTYAPHPED EKWPESEDTC KEVACIDSEE VTQLEPCSKW MQQQQQGQQL 120 PSSHNHLGPS NLTGSNLSPS NQGVSDVGPG GSPGRVGYYT NLLSYQSQGN ARFDIMREVD 180 VTSQRQPQIK HSFDHVVGTT F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396205.1	1e-149	uncharacterized protein LOC112292190
TrEMBL	A0A2K1JCY1	1e-148	A0A2K1JCY1_PHYPA; Uncharacterized protein
STRING	PP1S258_46V6.1	1e-133	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c15_12420V3.4.p
Entrez Gene	5942673

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]