PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_13960V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 484aa    MW: 51883.6 Da    PI: 7.1605
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_13960V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.7e-30293346155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pp3c15_13960V3.3.p 293 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 346
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.927290349IPR017930Myb domain
SuperFamilySSF466891.25E-19290350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-30292351IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23294346IPR006447Myb domain, plants
PfamPF002493.1E-7296345IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MHACERRRVV DMTMKDGDHV VEWNPGLPTG EELNPTSKSL ISLVLASGLS MKPEPLKTAA  60
DVSGESRASF LDSQVQRFSP MSFEALPLFK ERKDAGSFVC ASEVRDDGGG RGDGHVGGRG  120
GSIATGEGRS DARGEVRGET RGAEEPEIEA EVEVGLGLGL GSGGGGRDND RATVAEKQNC  180
CSHSASYSHG HGGHPMPTVF RGGSDGTSHQ PSEGRSEHSS GLPFMMNGLP AYGSPYERRP  240
DSSSYGGRGD DSSKGGGCAK NARKLADSDF EDTDSGGGPV NSNEETNART LKRPRLVWTP  300
QLHKRFVDAV GHLGIKNAVP KTIMQLMNVE GLTRENVASH LQKYRLYLKR MQGLSSDGPP  360
ANDQLFSSTP LPPNLGLHYM ANQREDVGGP SFPPATVPPM PYKGVGGGPL GPAHFSVYDR  420
MPYGVVNRGF LQRPPMKDRT EHISESENGN HQSVLSQNHH SYMEKRANSP EKRLLSLFPT  480
SSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-33293349157Transcription factor LUX
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397413.10.0uncharacterized protein LOC112292811 isoform X2
TrEMBLA0A2K1JD370.0A0A2K1JD37_PHYPA; Uncharacterized protein
STRINGPP1S104_175V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-49G2-like family protein