PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_18260V3.2.p
Common NamePHYPADRAFT_169374
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 460aa    MW: 50132.6 Da    PI: 4.843
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_18260V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.3e-15280334357
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         ++kr +r+ +NRe+ArrsR+RK+a + eLe+ +++L aeN++  k++ e++ + +
  Pp3c15_18260V3.2.p 280 DIKRVKRMLSNRESARRSRRRKQAHLTELETQAAQLRAENSSILKRVAEISLKFQ 334
                         58***************************************99999888776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-18278342IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-11278332No hitNo description
PROSITE profilePS5021711.082280330IPR004827Basic-leucine zipper domain
PfamPF001703.4E-12281330IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-10282327No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
PfamPF124985.7E-10383437IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MQRNFSVDDI LGTFWKLDTH GDPKGTVVPI PEEVEDDEEN HIPVVESLRT IEVDRGMNRS  60
ASEYAFQEFL KVSEAGGGFL RPKSRFNDED IRHNNDDEDD TDPPSPASPG SPETSENRTE  120
LSKQGSDDFN EADKVLCMPP TAPPKQEIRT KGGIVDQVED ALNPLFSGIR HEVESAATVS  180
NSPQEYEYFL KHKLDMACAA VALSRSTVGG AKAGPLTLQS SITPGANDII SGDPIGIPAL  240
PPKPEYGAVV PPARSRAITS GSDVSEDDES EQGQNAPPGD IKRVKRMLSN RESARRSRRR  300
KQAHLTELET QAAQLRAENS SILKRVAEIS LKFQEAALEN RVLKADVASL QAKLKIAESM  360
VAGTTDGRIG SMDLPQSTPR YMTYTTGGNG SQYLQQAPVV QQEQQQGFAG TKMGRTPSMQ  420
RVASLEHLQK RIRGGPTCNN PMWGGSFEDG HSMLEQHED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294301RRSRRRKQ
2296301SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119250.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397438.10.0basic leucine zipper 63-like
TrEMBLA9TD080.0A9TD08_PHYPA; Predicted protein
STRINGPP1S206_123V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.19e-41bZIP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]