PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_18270V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 470aa    MW: 51477.5 Da    PI: 5.5155
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_18270V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.72e-16280335358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         ++kr +r+ +NRe+ArrsR+RK+a + eLe  v++L  eN+ L ++l+ ++++ ++
  Pp3c15_18270V3.2.p 280 DIKRVKRMLSNRESARRSRRRKQAHLSELEMQVAQLRVENTNLLQRLQDISQKFQE 335
                         58******************************************999999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-17278342IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.438280335IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-11280334No hitNo description
PfamPF001702.3E-14281334IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.74E-11282332No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
PfamPF124985.2E-9395445IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEHSSSVDDL VGTFWDDSAN LVDKAAASTT INRSASEWSF QEFLKDSHSA AAGPGALKLR  60
PACKSRFLME HGDVKVCEPE AQKVKESLRA EEEDVGEEPY ISAAELRLYP HSGSSDFSAP  120
MGTSEELQVV DDNDPSVVVE GALNPLFSGM RDDNEAITAH ARIAGNPVAP DTLDGVRYPQ  180
EYEYILKHKL EMACAAVAMT RAKARQTRGS AEASVGRAEP SPKIQASGTL PPKGKTSACN  240
LPAAEKSDAD VGKSRPITSG SEVSEDEEHD EQNGKTAPGD IKRVKRMLSN RESARRSRRR  300
KQAHLSELEM QVAQLRVENT NLLQRLQDIS QKFQEAAIDN RVLTADCEAL RAKVNMAARD  360
LMARHGQIPG GQFILEPSLR YVLPYEMQPV ADESAQYMQQ VKENTPLAHQ DHQQSSTGLG  420
KMGRTPSMQR VASLEHLQKR IRSGVTCNTP SGNSYWEMEG PAMVEQHDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294301RRSRRRKQ
2296301SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.181970.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397437.10.0light-inducible protein CPRF2-like isoform X2
TrEMBLA0A2K1JDL40.0A0A2K1JDL4_PHYPA; Uncharacterized protein
STRINGPP1S206_122V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.11e-42bZIP family protein