PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_19246V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 176aa    MW: 20206.4 Da    PI: 5.9798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_19246V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.3e-203272345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         WTteE+ellv+a+  +G++ W++Ia++++ gRt++++k++w+
  Pp3c15_19246V3.1.p 32 GWTTEEEELLVHAHSTFGNR-WSAIAKMLP-GRTDNSIKNHWH 72
                        6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.553124IPR017877Myb-like domain
SuperFamilySSF466892.49E-27982IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-111037IPR009057Homeodomain-like
PROSITE profilePS5129426.52579IPR017930Myb domain
SMARTSM007171.8E-172977IPR001005SANT/Myb domain
PfamPF002491.2E-173272IPR001005SANT/Myb domain
CDDcd001672.29E-133375No hitNo description
Gene3DG3DSA:1.10.10.603.6E-213876IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MFTVGMEQTD RSGKQCRERW VNHLHPDIRK EGWTTEEEEL LVHAHSTFGN RWSAIAKMLP  60
GRTDNSIKNH WHATLRKKDR HGQLRPSLLR EYILKKTAAH DMSVKAWAIF PLPQSADNNE  120
DNMSDAYVAN SEKENRDAIQ NMQVDDTTTL HNCYTKDLAE EEANGEVHLV DEVVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27117837104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27117837104C-Myb DNA-Binding Domain
1msf_C2e-27117837104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395976.11e-116uncharacterized protein LOC112292072
TrEMBLA0A2K1JDQ31e-129A0A2K1JDQ3_PHYPA; Uncharacterized protein
STRINGPP1S206_27V6.11e-116(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-30myb domain protein 98