PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_19250V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 725aa MW: 78835.7 Da PI: 6.7199

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_19250V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.8e-07	660	690	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g W + Ed l ++vkq+G+++W++I+ m Pp3c15_19250V3.1.p 660 KGQWGAAEDRVLRKLVKQYGSRRWSLISTFM 690 799************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-7	654	690	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.214	655	687	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.4E-5	657	690	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-4	663	690	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MASDATSESE KKDETVANAQ GEQSRKQPLD PDSYSPPCCA FRENHLPIHL QHLQYGQLDE 60 AFFSHFPPAA LNMLAWQWPS NLAFAAAAPC SMSKDMSASS NHENTLNPVF EYVNQLGAVC 120 KQLPMHLDQA PQQQHHYLCQ YPHFMQMPQG LEVHDMQNQN TTPCKGEQSN LAELQRSEVT 180 PHLTNISSAV STHSMPTNFL PGVSTFQPRV GNNLAGYSSC GDAGMRSSYP ELLSKTANTQ 240 SHQGDVREEN CSRKRKQAGS EQTQYKYSSQ YAAVSPGQRL FHAPTSSGAL IPQDSAHCIE 300 DCLQHHCRVP CGSLMPAMSC LVNIDPIDSA DHGAAQRNGL QPGVGLWSQV GASSVYSPRC 360 LQCVPAPAST KVIHTPFLVS SASSTSPDVF NASRDFCSGA SLPSSSSPFQ LSAQSAFSCM 420 TSYDSPFLRP TSNPKVAGCY MQCMNPEFTT LTPPTANLPG SQRGQSACSD KITRRDERSE 480 HDPKCHSSDS RISIGSPAGI GSRHEPAEGC QGSDPGIVSS SVEHISLVNE FSSKESGDRR 540 EERNELGRTP EFIAREPSES AGVVYSSHQG GRCSGGRISS PEFCNLLGQD KHVLMRKNGQ 600 YTSPNDPLKM QVGGLAPSEH QTFDLANATA LGYVPLGDVH EVHTVPMDKS SSTLRQPGMK 660 GQWGAAEDRV LRKLVKQYGS RRWSLISTFM ASEYINHVYF LHTNASVSKT PDNLMGYDML 720 KSYS*

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MASDATSESE KKDETVANAQ GEQSRKQPLD PDSYSPPCCA FRENHLPIHL QHLQYGQLDE  60
AFFSHFPPAA LNMLAWQWPS NLAFAAAAPC SMSKDMSASS NHENTLNPVF EYVNQLGAVC  120
KQLPMHLDQA PQQQHHYLCQ YPHFMQMPQG LEVHDMQNQN TTPCKGEQSN LAELQRSEVT  180
PHLTNISSAV STHSMPTNFL PGVSTFQPRV GNNLAGYSSC GDAGMRSSYP ELLSKTANTQ  240
SHQGDVREEN CSRKRKQAGS EQTQYKYSSQ YAAVSPGQRL FHAPTSSGAL IPQDSAHCIE  300
DCLQHHCRVP CGSLMPAMSC LVNIDPIDSA DHGAAQRNGL QPGVGLWSQV GASSVYSPRC  360
LQCVPAPAST KVIHTPFLVS SASSTSPDVF NASRDFCSGA SLPSSSSPFQ LSAQSAFSCM  420
TSYDSPFLRP TSNPKVAGCY MQCMNPEFTT LTPPTANLPG SQRGQSACSD KITRRDERSE  480
HDPKCHSSDS RISIGSPAGI GSRHEPAEGC QGSDPGIVSS SVEHISLVNE FSSKESGDRR  540
EERNELGRTP EFIAREPSES AGVVYSSHQG GRCSGGRISS PEFCNLLGQD KHVLMRKNGQ  600
YTSPNDPLKM QVGGLAPSEH QTFDLANATA LGYVPLGDVH EVHTVPMDKS SSTLRQPGMK  660
GQWGAAEDRV LRKLVKQYGS RRWSLISTFM ASEYINHVYF LHTNASVSKT PDNLMGYDML  720
KSYS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	256	SRKRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395976.1	0.0	uncharacterized protein LOC112292072
TrEMBL	A0A2K1JDQ5	0.0	A0A2K1JDQ5_PHYPA; Uncharacterized protein
STRING	PP1S206_27V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c15_19250V3.1.p