PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_19980V3.3.p
Common NamePHYPADRAFT_169928
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 515aa    MW: 58535.7 Da    PI: 9.1098
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_19980V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.61.1e-20155234286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt+ e l+Li++r+++e r+ ++ +k  lW+e++++++++ f+r ++qC++kwe+l   yk++++g k++  e+    p++d+l+
  Pp3c15_19980V3.3.p 155 WTRPESLQLIRLRTQLEPRFAKSGRKTELWDEIAEALQKENFTRDAQQCRDKWEKLTAGYKEVRDGIKDK--ED---NPFYDDLH 234
                         ********************************************************************95..44...48999997 PP
2trihelix65.31.3e-20425504286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++ evl+Li++r em++r+  + ++++lW+e ++++  +g++r  kqC+ekw++l  +yk +++g++++     ++ py+ +l+
  Pp3c15_19980V3.3.p 425 WKRAEVLQLIKLRGEMDSRFAHSTRRAALWDELAERLLVQGIKRDGKQCREKWDKLMAEYKDVTDGKRDQ-----RESPYYAELT 504
                         ********************************************************************84.....3459999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.537147211IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4149211IPR009057Homeodomain-like
SMARTSM007170.0011151213IPR001005SANT/Myb domain
PfamPF138379.0E-18153236No hitNo description
CDDcd122036.01E-24153218No hitNo description
PROSITE profilePS500908.49417481IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4418482IPR009057Homeodomain-like
SMARTSM007170.032421483IPR001005SANT/Myb domain
CDDcd122032.58E-24423488No hitNo description
PfamPF138371.7E-17423505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MYSPQTSSLS THSRTAKAPS MFPTSSRSSE HTDRKAPDVA EAHVFTIDHQ MALPSSSSEK  60
QPATPKEKEK SVTATPGRRH VVYKAGSVVS PSHSLESPQS LFLSPLPAPH QYMSTSQGLP  120
TKDLENGNNS GATGEGADEE DKKQRESHKK RSKNWTRPES LQLIRLRTQL EPRFAKSGRK  180
TELWDEIAEA LQKENFTRDA QQCRDKWEKL TAGYKEVRDG IKDKEDNPFY DDLHSLLSGK  240
SVKRDREKER DELPVRELRK GSAHDTALAM KDEKMEPLQK SSETHDEDLD EGADEPARKR  300
KKPEPQFMSV TDMEAVQRVV ETVITRQQNF FRELLDAMER KEQMREQMRQ EKEDKWRAEE  360
RAQRGVFNNA MIILTQKLVG EQIGASLAMA PSATTPTVQS ESPPPLIVNS PEGPQGAPKR  420
RSKNWKRAEV LQLIKLRGEM DSRFAHSTRR AALWDELAER LLVQGIKRDG KQCREKWDKL  480
MAEYKDVTDG KRDQRESPYY AELTAILGRP VEAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.134440.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2K1JDU20.0A0A2K1JDU2_PHYPA; Uncharacterized protein
STRINGPP1S224_109V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.13e-13Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]