PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_20000V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WOX
Protein Properties Length: 330aa    MW: 35818.8 Da    PI: 6.4287
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_20000V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.6e-21161221257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t++++ql++Le+lFe+ + +p++++++e++++l     ++e++V++WFqNr+a+ k+
  Pp3c15_20000V3.1.p 161 RQRWTPSQHQLQILEKLFEQgSGTPNKQRIKEITAELsqhgAISETNVYNWFQNRKARAKR 221
                         89*****************99**************************************97 PP
2Wus_type_Homeobox99.42.7e-32160223265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ar+RWtP+++Q++iLe+l+++G  tPnk++i++itaeL+++G+i+++NV++WFQNrkaR ++kq
  Pp3c15_20000V3.1.p 160 ARQRWTPSQHQLQILEKLFEQGSGTPNKQRIKEITAELSQHGAISETNVYNWFQNRKARAKRKQ 223
                         789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-18152225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-16155224IPR009057Homeodomain-like
PROSITE profilePS5007114.916157222IPR001356Homeobox domain
SMARTSM003891.3E-13159226IPR001356Homeobox domain
CDDcd000869.55E-13161223No hitNo description
PfamPF000461.5E-18161221IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTKSVPLTSL IHGYAILRTD LDTLEPLQGI HWKSSRLIEN RQSNGMESES RLGRMMDMTP  60
LGSGLQGQPV PGGAALGLGP SLENSLPQPM YTRGSGQVMT EEQLETLRRQ ISVYATICQQ  120
LVEMHKASVS QQASLPGILA SGQIVSMDHL TGTPPHKSTA RQRWTPSQHQ LQILEKLFEQ  180
GSGTPNKQRI KEITAELSQH GAISETNVYN WFQNRKARAK RKQQLVTPRD GESEADTDVE  240
SPKEKRTRQE GEQNQDESGG VGDTNGGGNS DGAGNGVPEQ RAANFDQQDA ASSALLHSQT  300
DTKPDISSFN RSAGFDPHNV SQGIPPMMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.16710.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6998671e-163AB699867.1 Physcomitrella patens PpWOX13A gene for WUSCHEL-related homeobox protein 13A, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395858.10.0WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_024395859.10.0WUSCHEL-related homeobox 13-like isoform X1
RefseqXP_024395860.10.0WUSCHEL-related homeobox 13-like isoform X1
TrEMBLA0A2K1JDT20.0A0A2K1JDT2_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-50WUSCHEL related homeobox 13