PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_6330V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ZF-HD

Protein Properties

Length: 249aa MW: 27210.9 Da PI: 7.9414

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_6330V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	27	1e-08	19	59	8	55
ZF-HD_dimer 8 eClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 +C k hA lG vDGC+ f + +++++ C ACgCH +FH + Pp3c15_6330V3.3.p 19 KCTKLHAH-LG-PGVDGCQLFDGE-----NSSSMLCGACGCHMSFHVK 59 68888874.44.579***9887.....6789***********77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	15.399	17	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.2E-5	19	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MVTGYNLDRV MIYSRNRGKC TKLHAHLGPG VDGCQLFDGE NSSSMLCGAC GCHMSFHVKL 60 NLGGSSHDLE NHELLDLEPG LKRCKMSLDA SPAESVGDNI DSNPDLEVNS GPCPEDLLRV 120 FRSRKSEGQP PVFLQPVLIK PGRDEIRVNS SAPLYTETSL YTKLCSKLKL IQAGHPEDIH 180 GKFSIVHDDV NGYRVYCGGC NRHYGIPKPG YSLGNFERGH LASKRHKDVG AADGRMKVQK 240 VRDFFAAG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12628	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396967.1	0.0	uncharacterized protein LOC112292581
Refseq	XP_024396968.1	0.0	uncharacterized protein LOC112292581
TrEMBL	A0A2K1JC77	0.0	A0A2K1JC77_PHYPA; Uncharacterized protein
STRING	PP1S291_41V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c15_6330V3.3.p