PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_8710V3.1.p
Common NamePHYPADRAFT_150526
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 336aa    MW: 38757.5 Da    PI: 5.2929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_8710V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.82.2e-762033179373
               GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLa 166
                        + l+ +++++P+++f++ + N a+lea+eg e++Hi+Df+ ++G+QWp++++aL++R++gpp s+R+T ++s+ ++    ++++ee+g+rL+
  Pp3c15_8710V3.1.p  20 TELTRLVDLTPYFRFGYTASNGALLEAFEGVEQIHILDFSTTHGMQWPTFIEALSDREHGPPsSFRLTLLSSSVPFpprLQTTYEEVGQRLS 111
                        3334499***************************************************888879********99889988999********* PP

               GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............desvsles..erdevLklvkslsPkvvvvveq 244
                        k+A+  ++pf+f+v +++ l++l+ ++Lr++++E+l Vnl+l++h+l             ++ ++ +s  + d++L l++ l+P+vv++ e+
  Pp3c15_8710V3.1.p 112 KYARLRNIPFDFDV-LSQPLANLSSSDLRLREEEVLGVNLSLRIHHLSeestdesspresQQYGAPQSlcPGDKFLYLIRCLNPTVVTLYEE 202
                        **************.6********************************7777777776652222222256789******************* PP

               GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                        ++d++s+ F++r+ ++  y ++ fd l++  p+e++er+  E+  +g++i+n+vaceg +r +r e++++W +r+++  F+  p++e++ +q
  Pp3c15_8710V3.1.p 203 DCDTSSSCFVKRVEQSYAYEWMPFDFLATIWPSENSERQEHEKN-VGKKIENIVACEGLNRLNRLESKKQWLRRMNKLRFRIQPVREDVKSQ 293
                        ********************************************.*********************************************** PP

               GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                         + ++ +++ ++g++ +ee ++  l Wk++pL++ S+W
  Pp3c15_8710V3.1.p 294 LQDVVDHHNtGWGMKNDEETNTQSLLWKGNPLTFSSSW 331
                        *********9**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.0881311IPR005202Transcription factor GRAS
PfamPF035147.5E-7420331IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGGFFAFTEV QWTERRYSLT ELTRLVDLTP YFRFGYTASN GALLEAFEGV EQIHILDFST  60
THGMQWPTFI EALSDREHGP PSSFRLTLLS SSVPFPPRLQ TTYEEVGQRL SKYARLRNIP  120
FDFDVLSQPL ANLSSSDLRL REEEVLGVNL SLRIHHLSEE STDESSPRES QQYGAPQSLC  180
PGDKFLYLIR CLNPTVVTLY EEDCDTSSSC FVKRVEQSYA YEWMPFDFLA TIWPSENSER  240
QEHEKNVGKK IENIVACEGL NRLNRLESKK QWLRRMNKLR FRIQPVREDV KSQLQDVVDH  300
HNTGWGMKND EETNTQSLLW KGNPLTFSSS WVPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-3422333115420Protein SHORT-ROOT
5b3h_E1e-3422333115420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397576.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397577.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397578.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397579.10.0scarecrow-like protein 32 isoform X1
RefseqXP_024397580.10.0scarecrow-like protein 32 isoform X2
TrEMBLA0A2K1JCJ90.0A0A2K1JCJ9_PHYPA; Uncharacterized protein
STRINGPP1S318_4V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.18e-71GRAS family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]