PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_9180V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 1031aa MW: 112559 Da PI: 6.5648

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_9180V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	584	634	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pp3c15_9180V3.2.p 584 EKTIGLSVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 634 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	566	654	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-25	587	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-22	921	1015	No hit	No description
PROSITE profile	PS51745	22.618	932	1014	IPR000270	PB1 domain
SMART	SM00666	2.4E-14	932	1014	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-21	933	1012	No hit	No description
Pfam	PF00564	2.5E-14	933	1011	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
MLLSDQNLSS MENVVDYNDL FEKSRVNSSF LAMPSEDDED EAEEKSGLSE EEKVVGEGET 60 RKRTLTRALS SPPMSFRDRL LQAVRYIGRL RMDVLVQVWM PVVQQTSSSS SKRVLITRDQ 120 PFVLEQKNDK LSNFRSASED YEFAADAGIT GMGLPGRVFV HQMPEWSPNV QMYNCQEYLR 180 HVEAQRCDVR GSLALPIMDP VSSQCVAVIE LVGCTEKIQF HSDVDIVSRA VQAVHLSTVN 240 SLETPVPERL SQGRQAVLNE IAEVLTAVCE THKLPLAQTW VPTYRYGSMD IKVHQSGSKR 300 MRSENGSGLS RNTSSSPCSG EILRTGDGPC YVSDGRIWGF RRACLEHSLE KGQGVAGKAF 360 ETNQPNFDSD VKIHCKTEYP LAHHAKCFGL GAAVAIRLRS IRTGNDDFIL EFFLPSTCVE 420 SKEQQLLLNS LSITMQRTCR SLRTITDEEE KEELHIAGNG NVLVKAEAKE EPIDGDCVFH 480 PRTPYGSQEG ISLISSGAKG EEQATHCQLP HPSLISQLSL QRNSNWQSSY LLNPSESQQH 540 ASKSEDSDPL VNHVLGLDRL GCSNAAQVAA SQRRKLDRRR GTTEKTIGLS VLQQYFAGSL 600 KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVSRSLKK LQGVIDSVQG ADGALRINAL 660 TGDITTASMA ADNGSGHAGS DGSCAKSKWS VSWSTPAPRN RDLEDHKVRG GTLLLPKEED 720 RKKHDSCSPQ SVLMSILSSP ETKPSRHWHT NEKSAGVSAE GNDLAVGHDS GFRGASTLSP 780 GSNLTIDTGL AVVCDAVTAH HDLLGARSQQ SSPSSGSYDD IAPPTSKVDS RGSGLPESKT 840 GSGCQNQVHD SASAEVAIKD VCKKNKSPEV GVSSSSLNED QEQEREVMGG SGTSNSPRFG 900 SSTAQGTSDC SSPSSAGNPS SHMKTWPAHS DVITMKVTYN EDTVRFKLSS DKSYLDLRDQ 960 VNRRLKLAGL KFDLKYLDDD EEWMLLACDA DLQECLEVMR VSRRNAVKLM VRCNVSSSVE 1020 TSCADDKTLS *

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

MLLSDQNLSS MENVVDYNDL FEKSRVNSSF LAMPSEDDED EAEEKSGLSE EEKVVGEGET  60
RKRTLTRALS SPPMSFRDRL LQAVRYIGRL RMDVLVQVWM PVVQQTSSSS SKRVLITRDQ  120
PFVLEQKNDK LSNFRSASED YEFAADAGIT GMGLPGRVFV HQMPEWSPNV QMYNCQEYLR  180
HVEAQRCDVR GSLALPIMDP VSSQCVAVIE LVGCTEKIQF HSDVDIVSRA VQAVHLSTVN  240
SLETPVPERL SQGRQAVLNE IAEVLTAVCE THKLPLAQTW VPTYRYGSMD IKVHQSGSKR  300
MRSENGSGLS RNTSSSPCSG EILRTGDGPC YVSDGRIWGF RRACLEHSLE KGQGVAGKAF  360
ETNQPNFDSD VKIHCKTEYP LAHHAKCFGL GAAVAIRLRS IRTGNDDFIL EFFLPSTCVE  420
SKEQQLLLNS LSITMQRTCR SLRTITDEEE KEELHIAGNG NVLVKAEAKE EPIDGDCVFH  480
PRTPYGSQEG ISLISSGAKG EEQATHCQLP HPSLISQLSL QRNSNWQSSY LLNPSESQQH  540
ASKSEDSDPL VNHVLGLDRL GCSNAAQVAA SQRRKLDRRR GTTEKTIGLS VLQQYFAGSL  600
KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVSRSLKK LQGVIDSVQG ADGALRINAL  660
TGDITTASMA ADNGSGHAGS DGSCAKSKWS VSWSTPAPRN RDLEDHKVRG GTLLLPKEED  720
RKKHDSCSPQ SVLMSILSSP ETKPSRHWHT NEKSAGVSAE GNDLAVGHDS GFRGASTLSP  780
GSNLTIDTGL AVVCDAVTAH HDLLGARSQQ SSPSSGSYDD IAPPTSKVDS RGSGLPESKT  840
GSGCQNQVHD SASAEVAIKD VCKKNKSPEV GVSSSSLNED QEQEREVMGG SGTSNSPRFG  900
SSTAQGTSDC SSPSSAGNPS SHMKTWPAHS DVITMKVTYN EDTVRFKLSS DKSYLDLRDQ  960
VNRRLKLAGL KFDLKYLDDD EEWMLLACDA DLQECLEVMR VSRRNAVKLM VRCNVSSSVE  1020
TSCADDKTLS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.18014	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397374.1	0.0	protein NLP1-like isoform X2
TrEMBL	A0A2K1JCK3	0.0	A0A2K1JCK3_PHYPA; Uncharacterized protein
STRING	PP1S250_18V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-131	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c15_9180V3.2.p