PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c15_9360V3.1.p
Common NamePHYPADRAFT_93906
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Nin-like
Protein Properties Length: 692aa    MW: 74843.2 Da    PI: 9.1484
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c15_9360V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK74.61.2e-23405454352
             RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ++++l+dls yF+l++ +AAk+Lgv++T+LK++CR++G+kRWP Rk++sl
  Pp3c15_9360V3.1.p 405 HHLKLSDLSTYFHLSVVEAAKKLGVSQTTLKKACRKFGLKRWPGRKVRSL 454
                        6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.779390474IPR003035RWP-RK domain
PfamPF020422.3E-20407454IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.107.9E-4410447IPR011991Winged helix-turn-helix DNA-binding domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGNKQLVAIV NPTKAPLSGN GCLDAEISGS ASPMRLLGVH QKPKSKSDTA INNYNLPPTS  60
CSPDSNGIGT ESPRIGPRFM HLGHYKPPYR SNHSKLATEP STQGLKIAIP PADPPSLSFQ  120
EDRFCSFHAD YATERLAGSL PPLETSRMNY INGKAMMCGG RDGHGTSTHF SPNPTPSPAE  180
LAQMLVRSSS HPHPRMQQQH AGYGGGAMPT IPGVVQCNRS ATSTPNANGG FQSFASAMHS  240
RLPMMPNNNV NMHCPHGATT NIALLAQFLA SQLRAFVPAE EAAHPAVDVT NFSPSRENKY  300
CSQLKNANPR ISIPPPKVCN GPTAEKENYP EALGTIVENG SPKDFTGIVK LPVSGSHDKD  360
ESSSSANVNT TVAPSSDGVD SEHPNGHSDL VFLVNRRSKR GVGTHHLKLS DLSTYFHLSV  420
VEAAKKLGVS QTTLKKACRK FGLKRWPGRK VRSLESTIHG LEHTIAVGQG AGLEELTEAY  480
MRSEVSKLQQ EMNQLVHGTP AQHSPAVRTA DLYKRLYSRG WRSKYHNSSR HDLDLSNTIH  540
ENRPSELVQS AKKATETMTK IVNSACKVLE GGQANKSRAE RLVLCEDSLN QQNQTTCVSA  600
VKELDNGDQL RESRKETAFE EPSTPVNVPV HNGAGVNCAN DNAEKSCPEK VIPKEKEIIF  660
PERSPKRPKR ECRTAAEGAV RQGLRSSTCA M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396538.10.0uncharacterized protein LOC112292373
TrEMBLA0A2K1JCK10.0A0A2K1JCK1_PHYPA; Uncharacterized protein
STRINGPP1S250_38V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-14RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]