PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c15_9360V3.2.p

Common Name

PHYPADRAFT_93906

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Nin-like

Protein Properties

Length: 812aa MW: 87555.2 Da PI: 8.3658

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c15_9360V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.3	1.5e-23	525	574	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dls yF+l++ +AAk+Lgv++T+LK++CR++G+kRWP Rk++sl Pp3c15_9360V3.2.p 525 HHLKLSDLSTYFHLSVVEAAKKLGVSQTTLKKACRKFGLKRWPGRKVRSL 574 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	510	594	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-20	527	574	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.10	9.6E-4	530	567	IPR011991	Winged helix-turn-helix DNA-binding domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MEGSDRDSEG SKGGSGLIAA SLQQTPPPIV SGNGGGGCGG VLGSVDKVKF TVSVRGHQWS 60 SARHVNETLQ EFAATIQRNA RRLEFIEEQD TIQRLQLSYL DGSEPEDLDV DATLGDVIIC 120 MGNKQLVAIV NPTKAPLSGN GCLDAEISGS ASPMRLLGVH QKPKSKSDTA INNYNLPPTS 180 CSPDSNGIGT ESPRIGPRFM HLGHYKPPYR SNHSKLATEP STQGLKIAIP PADPPSLSFQ 240 EDRFCSFHAD YATERLAGSL PPLETSRMNY INGKAMMCGG RDGHGTSTHF SPNPTPSPAE 300 LAQMLVRSSS HPHPRMQQQH AGYGGGAMPT IPGVVQCNRS ATSTPNANGG FQSFASAMHS 360 RLPMMPNNNV NMHCPHGATT NIALLAQFLA SQLRAFVPAE EAAHPAVDVT NFSPSRENKY 420 CSQLKNANPR ISIPPPKVCN GPTAEKENYP EALGTIVENG SPKDFTGIVK LPVSGSHDKD 480 ESSSSANVNT TVAPSSDGVD SEHPNGHSDL VFLVNRRSKR GVGTHHLKLS DLSTYFHLSV 540 VEAAKKLGVS QTTLKKACRK FGLKRWPGRK VRSLESTIHG LEHTIAVGQG AGLEELTEAY 600 MRSEVSKLQQ EMNQLVHGTP AQHSPAVRTA DLYKRLYSRG WRSKYHNSSR HDLDLSNTIH 660 ENRPSELVQS AKKATETMTK IVNSACKVLE GGQANKSRAE RLVLCEDSLN QQNQTTCVSA 720 VKELDNGDQL RESRKETAFE EPSTPVNVPV HNGAGVNCAN DNAEKSCPEK VIPKEKEIIF 780 PERSPKRPKR ECRTAAEGAV RQGLRSSTCA M*

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MEGSDRDSEG SKGGSGLIAA SLQQTPPPIV SGNGGGGCGG VLGSVDKVKF TVSVRGHQWS  60
SARHVNETLQ EFAATIQRNA RRLEFIEEQD TIQRLQLSYL DGSEPEDLDV DATLGDVIIC  120
MGNKQLVAIV NPTKAPLSGN GCLDAEISGS ASPMRLLGVH QKPKSKSDTA INNYNLPPTS  180
CSPDSNGIGT ESPRIGPRFM HLGHYKPPYR SNHSKLATEP STQGLKIAIP PADPPSLSFQ  240
EDRFCSFHAD YATERLAGSL PPLETSRMNY INGKAMMCGG RDGHGTSTHF SPNPTPSPAE  300
LAQMLVRSSS HPHPRMQQQH AGYGGGAMPT IPGVVQCNRS ATSTPNANGG FQSFASAMHS  360
RLPMMPNNNV NMHCPHGATT NIALLAQFLA SQLRAFVPAE EAAHPAVDVT NFSPSRENKY  420
CSQLKNANPR ISIPPPKVCN GPTAEKENYP EALGTIVENG SPKDFTGIVK LPVSGSHDKD  480
ESSSSANVNT TVAPSSDGVD SEHPNGHSDL VFLVNRRSKR GVGTHHLKLS DLSTYFHLSV  540
VEAAKKLGVS QTTLKKACRK FGLKRWPGRK VRSLESTIHG LEHTIAVGQG AGLEELTEAY  600
MRSEVSKLQQ EMNQLVHGTP AQHSPAVRTA DLYKRLYSRG WRSKYHNSSR HDLDLSNTIH  660
ENRPSELVQS AKKATETMTK IVNSACKVLE GGQANKSRAE RLVLCEDSLN QQNQTTCVSA  720
VKELDNGDQL RESRKETAFE EPSTPVNVPV HNGAGVNCAN DNAEKSCPEK VIPKEKEIIF  780
PERSPKRPKR ECRTAAEGAV RQGLRSSTCA M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396538.1	0.0	uncharacterized protein LOC112292373
TrEMBL	A9TKE2	0.0	A9TKE2_PHYPA; Predicted protein
STRING	PP1S250_38V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP18778	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c15_9360V3.2.p
Entrez Gene	5942293

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]