PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_1200V3.2.p

Common Name

PHYPADRAFT_167396

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 554aa MW: 60896.9 Da PI: 10.1198

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_1200V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	38.1	2.5e-12	342	368	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 CG++le G +C++ Pvkg+KRC+ HK Pp3c16_1200V3.2.p 342 CGILLESGLPCSALPVKGGKRCRIHKK 368 **************************5 PP
2	HRT-like	48.8	1.2e-15	503	532	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++l dG+vC ++P ++RKRCe+HKG R Pp3c16_1200V3.2.p 503 ICGLKLLDGTVCPDPPRPDRKRCEAHKGLR 532 8***************************99 PP

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MKREDHAHVK HDSSFSDWKV LVGPSDWKDH ACGKAQDRFR VKNLPTSYSG SGLYELGVTP 60 PAWLPPQRNN YPGILKPQDV VVVYLGCAES VNYHLQRYGQ TGAHLEGVRS TRLFSAKNET 120 ASKPGLPQLE KTRSFASECR NLSIDLAPGA DGDVSTGSNG SIDNTDDLQA TSEKKRANTS 180 DHIGNRSPVR GPCLFSEVFA LGCSIAFRWA ATDSKAAADK AEFELTEVFD YAWKRGGNFR 240 QRSADILAKI VKGGALGSND LPYGCFGYNS RCICFFFKRS RVGVKIAARK LPDDNHRFVR 300 SRRSNPSGGS DFFSFRYSPP LLPGKTAKSA AFTKLDIPID RCGILLESGL PCSALPVKGG 360 KRCRIHKKIS HKKPARVAHT SSPTYDSNGA LPRDTNVSKN SGKTPTKPPP EHSTSCFPYR 420 PQVQPVPGAP AEPKRRGSLS FNSWLRTSEL RMAKSREWAE LKTPLSPRPE GTRRSSTSYS 480 SILATCEESM YESPCRSPSR REICGLKLLD GTVCPDPPRP DRKRCEAHKG LRNQMLPQSP 540 VYSSTASLRQ GFV*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MKREDHAHVK HDSSFSDWKV LVGPSDWKDH ACGKAQDRFR VKNLPTSYSG SGLYELGVTP  60
PAWLPPQRNN YPGILKPQDV VVVYLGCAES VNYHLQRYGQ TGAHLEGVRS TRLFSAKNET  120
ASKPGLPQLE KTRSFASECR NLSIDLAPGA DGDVSTGSNG SIDNTDDLQA TSEKKRANTS  180
DHIGNRSPVR GPCLFSEVFA LGCSIAFRWA ATDSKAAADK AEFELTEVFD YAWKRGGNFR  240
QRSADILAKI VKGGALGSND LPYGCFGYNS RCICFFFKRS RVGVKIAARK LPDDNHRFVR  300
SRRSNPSGGS DFFSFRYSPP LLPGKTAKSA AFTKLDIPID RCGILLESGL PCSALPVKGG  360
KRCRIHKKIS HKKPARVAHT SSPTYDSNGA LPRDTNVSKN SGKTPTKPPP EHSTSCFPYR  420
PQVQPVPGAP AEPKRRGSLS FNSWLRTSEL RMAKSREWAE LKTPLSPRPE GTRRSSTSYS  480
SILATCEESM YESPCRSPSR REICGLKLLD GTVCPDPPRP DRKRCEAHKG LRNQMLPQSP  540
VYSSTASLRQ GFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024397931.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A9T037	0.0	A9T037_PHYPA; Predicted protein
STRING	PP1S144_109V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	9e-21	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c16_1200V3.2.p
Entrez Gene	5935183

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]