PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_12230V3.2.p

Common Name

PHYPADRAFT_235404, PPML1

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 51aa MW: 5828.02 Da PI: 9.7544

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_12230V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.2	2.1e-13	11	47	3	39
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 i+n+ +++++s R + +lKK +ELS+LC +e a+i+ Pp3c16_12230V3.2.p 11 IKNDAFQTTSYSMRMKKLLKKVNELSILCKIEMAIIY 47 99**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.19E-9	10	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-10	11	47	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.274	11	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 51 aa Download sequence Send to blast
MLVIFNIGPH IKNDAFQTTS YSMRMKKLLK KVNELSILCK IEMAIIYDHS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9RLA2	1e-28	A9RLA2_PHYPA; MADS-like MADS-domain protein PPML1
STRING	PP1S15_307V6.1	2e-29	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c16_12230V3.2.p
Entrez Gene	5918212

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]