PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_15450V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93170.2 Da    PI: 6.2622
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_15450V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-182785357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++ps  +r +L k++    +++ +q+kvWFqNrR +ek+
  Pp3c16_15450V3.2.p 27 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKECpilaNIEPKQIKVWFQNRRCREKQ 85
                        5678*****************************************************97 PP
2START157.69.9e-501853922204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+   +    v+e+l+d++ W+++++++e+l ++ +g  g+
  Pp3c16_15450V3.2.p 185 MAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLAALDFS-KVAEILKDRPGWSQDCRRMEVLGTLPTGngGT 274
                         57999*****************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++l+p Rdf ++Ry+  l++g +vi+++S++ + + p+    +s++Rae++pSg+li+p+++g++ +++v+hv+++ +++
  Pp3c16_15450V3.2.p 275 IELLYTQMYAPTTLAPaRDFCTLRYTTLLEDGNLVICERSLTGKHNGPTmppVQSFIRAEMFPSGYLIRPCEGGGCIIHIVDHVEYEPWSV 365
                         ******************************************999988888899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s ++ + k + a+l++++
  Pp3c16_15450V3.2.p 366 PEVLRPLYESPAVLAHKSTIAALRYLR 392
                         **********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4992286IPR001356Homeobox domain
SuperFamilySSF466892.87E-172289IPR009057Homeodomain-like
SMARTSM003898.9E-152490IPR001356Homeobox domain
CDDcd000863.56E-162787No hitNo description
PfamPF000461.7E-152885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-182985IPR009057Homeodomain-like
CDDcd146860.00179115No hitNo description
PROSITE profilePS5084822.643175375IPR002913START domain
CDDcd088751.81E-79179395No hitNo description
Gene3DG3DSA:3.30.530.202.4E-20184375IPR023393START-like domain
SMARTSM002343.1E-41184394IPR002913START domain
SuperFamilySSF559612.33E-34185395No hitNo description
PfamPF018524.4E-47186392IPR002913START domain
PfamPF086701.4E-45713854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAGERCFEAS SNLVDPDKYK GMDSSGKYVR YTNEQVEALE RVYHECPKPS SIRRHQLIKE  60
CPILANIEPK QIKVWFQNRR CREKQRKEAT RLVSVNAKLT ALNKLLMEEN ERLAKHASQL  120
TLDNHALRQQ LPNLPVPDGK CRLSGQAGVA STDTSCDSAV TGGLPQHLTS QHSSPDASPA  180
GLLSMAEETL TDFLAKATGT AVDWIQLPGM KPGPDAIGII AISHGCVGIA ARACGLAALD  240
FSKVAEILKD RPGWSQDCRR MEVLGTLPTG NGGTIELLYT QMYAPTTLAP ARDFCTLRYT  300
TLLEDGNLVI CERSLTGKHN GPTMPPVQSF IRAEMFPSGY LIRPCEGGGC IIHIVDHVEY  360
EPWSVPEVLR PLYESPAVLA HKSTIAALRY LRRIAAEESG EIIIRNGQHP AVIRTLSQRL  420
TKGFNDAVNG FGDDGWVPME SDGMDDVSVM LNATPKSMEG QIATDKLLFS LGGGILCAKA  480
SMLLQNVPPA LLIRFLREHR SEWADHEIDA NAATAFRGAS NGHVSRGRMS HVQLPLPLAQ  540
FGEQGEFLEV VKLEGHSAVQ HSVLSRDSFL LQLCSGIEEG AVGAGAQLVF APIDAAVSED  600
IPLLPSGFRV IPVDSSVVDG IGLNRTLDLA STLEDHEAGL NGESKSNGSS SQVRSVLTIA  660
FQFAYEVHTR ETCAVMARQY VRTVVASVQR VAMALAPSRG QPRPALGNSD AISLARHILS  720
SYRVQLGMDL VRPEVGGTEA LFKVFWHHSD AIVCCAWKGT PEFVFANRAG LEMFETTSSS  780
LQDLAWDKTL DEDSLKLSYA TFTQVLQQGY CCLPSGVRIS STGRTVTYER ALAWKVLDDD  840
ETTQCIAFLF MNWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.162180.0gametophore
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572020.0DQ657202.1 Physcomitrella patens class III HD-Zip protein HB12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4290.0Q0Q429_PHYPA; Class III HD-Zip protein HB12
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]