PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c16_19170V3.1.p

Common Name

PHYPADRAFT_235399, PPTIM2

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 20348.1 Da PI: 9.4307

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c16_19170V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.8	2.1e-21	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien s rqv fskRr g++KKA+ELS+LC+ ev vi+fs+ gk + + Pp3c16_19170V3.1.p 9 KKIENPSARQVCFSKRRGGLIKKASELSILCGSEVGVIVFSQAGKAFSF 57 68******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-33	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.375	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-26	1	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.68E-35	2	68	No hit	No description
PRINTS	PR00404	6.0E-22	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGRAKIEIKK IENPSARQVC FSKRRGGLIK KASELSILCG SEVGVIVFSQ AGKAFSFGHP 60 SIDYVIDKTL SGESSDSDSG SAVTDVASQK VQQVQALQQQ QKQVTQLLAS ERELQRRLLS 120 YPFWWQKPVT NYRPQELHYL LQRLDGLYEM LLSRAAALQH GTTVNTSVEM MQNRLTNTES 180 GE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-16	1	90	1	91	MEF2C
5f28_B	2e-16	1	90	1	91	MEF2C
5f28_C	2e-16	1	90	1	91	MEF2C
5f28_D	2e-16	1	90	1	91	MEF2C
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024398543.1	1e-133	agamous-like MADS-box protein AGL61
TrEMBL	A9SI21	1e-132	A9SI21_PHYPA; Type I-M alpha MADS-domain protein PPTIM2
STRING	PP1S81_202V6.1	1e-133	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-25	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Pp3c16_19170V3.1.p
Entrez Gene	5929270

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]