PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_21850V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family S1Fa-like
Protein Properties Length: 34aa    MW: 3993.06 Da    PI: 10.6489
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_21850V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA25.23.4e-081331547
                S1FA 15 livllvvgglllvflvgnyilyvyaqknlPPrk 47
                        li+l+v+   ll+f + ny +y y qknl  +k
  Pp3c16_21850V3.1.p  1 LIILIVILRALLIFGLKNYFIYQYIQKNLLIKK 33
                        8***************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046898.7E-6133IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 34 aa     Download sequence    Send to blast
LIILIVILRA LLIFGLKNYF IYQYIQKNLL IKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-