PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_23260V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 507aa    MW: 56623.5 Da    PI: 6.4006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_23260V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.41.2e-48291562128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrF+Ptdeelv +yLk+ v+g+++e+ e i+ +d+y+++Pw+Lp +++ ++e+ew fF++rdkky++g r+nr+t+sgyWkatg+d++
  Pp3c16_23260V3.1.p  29 LPGFRFQPTDEELVGFYLKNMVTGNRTEV-ELINVLDLYRYDPWELPaMAAMQGEREWLFFCPRDKKYPNGARPNRVTTSGYWKATGTDRP 118
                         59************************999.89***************555566889*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v ++ +++ +glkktLvfy+g+apkg kt+W+m+eyrl
  Pp3c16_23260V3.1.p 119 VRRAhDSRCIGLKKTLVFYTGKAPKGLKTEWIMNEYRL 156
                         *99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-5323191IPR003441NAC domain
PROSITE profilePS5100553.85928191IPR003441NAC domain
PfamPF023652.1E-2430156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MWNQRQAWDS KVLTQSSSPD LALHGMASLP GFRFQPTDEE LVGFYLKNMV TGNRTEVELI  60
NVLDLYRYDP WELPAMAAMQ GEREWLFFCP RDKKYPNGAR PNRVTTSGYW KATGTDRPVR  120
RAHDSRCIGL KKTLVFYTGK APKGLKTEWI MNEYRLPVNI EYFCRTLDLP YNSSAPLMDG  180
REIALCRIYK KPMQINLSYP NLFSEFTTMD HGDDSSCQFK SSEGEVTGPA ALCQNNSILH  240
QSSCDAVLSQ PTPSSEWSSS PTSPVSYNPV CYGPSRWSFT NEMDNLCDTA SPRFRGQNPM  300
QTLWPTSQYE VPQECQSSFG GRGVKPENTS QSLHSSLLCP IPSSENAHFI QSVFDIKRTN  360
LETQYHDESV FLDASTNKAA TENFTDSIPK SNGLRDIVSN RGGILPVEQV VDRLSWLGEQ  420
GLDLTPAVRP DAGFQPCGND STLTNINWPP KKSSRPSQLP TPAAKDTVTD LQGSAPTLLF  480
NQCIRNSQQS WLKTIAAPSA RYALSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-473019119165NO APICAL MERISTEM PROTEIN
1ut4_B1e-473019119165NO APICAL MERISTEM PROTEIN
1ut7_A1e-473019119165NO APICAL MERISTEM PROTEIN
1ut7_B1e-473019119165NO APICAL MERISTEM PROTEIN
4dul_A1e-473019119165NAC domain-containing protein 19
4dul_B1e-473019119165NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398320.10.0NAC domain-containing protein 77-like
TrEMBLA0A2K1J9R80.0A0A2K1J9R8_PHYPA; Uncharacterized protein
STRINGPP1S4_283V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-66NAC domain containing protein 35