PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_11050V3.2.p
Common NamePHYPADRAFT_233780
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 384aa    MW: 43279.2 Da    PI: 8.4609
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_11050V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.33.6e-12138223186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ + v + +++++e+  ++ rg+ + ++We+  ++  +e+g  +s kqC++k+++l+kr+k +k ++ +    ++ ++++f++++
  Pp3c17_11050V3.2.p 138 EWSARSVALFLDLYEEKYFEMDRGSFRSKDWEQLVDRFnMEGGGGKSVKQCRDKMDSLKKRHKLEKGRKAST-GAETCSWVWFQKMD 223
                         5*******************************9766665***************************999995.666679******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.5E-5135198IPR001005SANT/Myb domain
PfamPF138372.3E-15136224No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSGGGSQHRA ESRHASAEPS SFTARAAIAA VVCWSSDLAI GKDSYRESRI EGDWRGIVRV  60
GAVDWYFRVA IALQIRPKRS IWAEKICGVT FLAMDGDRSQ TPVSLPPPMK MLSTTSLQSS  120
ETEKKPSVAR NGDEKREEWS ARSVALFLDL YEEKYFEMDR GSFRSKDWEQ LVDRFNMEGG  180
GGKSVKQCRD KMDSLKKRHK LEKGRKASTG AETCSWVWFQ KMDGMFGDHP KHQSVLLGPP  240
DAVDMKFPAD KFRITGGENV VIEEEESRRL VGSWREAKKI LQELPLSAEE RGKARTLLLE  300
KKEEERLEYF EGDFEEVSHC LKLLVERASG HPTGMAGLVQ MDFATASDIQ RRLEEVLTDV  360
ISLKRRAASD LRYFMPSAKN SRG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.5640.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400336.10.0uncharacterized protein LOC112294274
TrEMBLA0A2K1J3F70.0A0A2K1J3F7_PHYPA; Uncharacterized protein
TrEMBLA9SQT80.0A9SQT8_PHYPA; Predicted protein
STRINGPP1S105_83V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.23e-20Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]