PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_12030V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 154aa MW: 16891.8 Da PI: 5.0371

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_12030V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	42.2	1.7e-13	53	137	14	98
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + + ++P++r+++++k++ d++ + ea l++ka e+f+ +l ++ + + n + ++ +++ v++++ +fl divp Pp3c17_12030V3.1.p 53 QSLLTLAFPISRVRRLVKSEGDIQWVGVEAGFLIAKATEIFLEKLVEDAFERMQGNGQASILYPHLSSHVASSERLEFLSDIVPV 137 4555778****************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.02E-16	42	138	IPR009072	Histone-fold
Pfam	PF00808	1.3E-7	60	119	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.3E-20	60	136	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSTTNSESEV QRSCEEEDKT ENGYSHEENG DMTNNGLTSA SWRASSRAKK SQQSLLTLAF 60 PISRVRRLVK SEGDIQWVGV EAGFLIAKAT EIFLEKLVED AFERMQGNGQ ASILYPHLSS 120 HVASSERLEF LSDIVPVRIP AAAALRNASM TDK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9623	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400121.1	1e-110	putative transcription factor C16C4.22
TrEMBL	A0A2K1J3J8	1e-109	A0A2K1J3J8_PHYPA; Uncharacterized protein
STRING	PP1S329_24V6.1	1e-110	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8670	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-19	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Pp3c17_12030V3.1.p