PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_13470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 221aa    MW: 24454.3 Da    PI: 10.6736
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_13470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-08127176147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  Pp3c17_13470V3.1.p 127 RRPFSVVEVEALVHAVEKLGTGRWRDVKIQAFeqaKHRTYVDLKDKWKTL 176
                         6789999******************988777789*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.997122181IPR017930Myb domain
SMARTSM007174.1E-6126179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10127177IPR009057Homeodomain-like
CDDcd116602.90E-17128178No hitNo description
SuperFamilySSF466891.94E-15128208IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVPTTLIHCL CRGRSNILAT KSNLTERMAL LPHSMRVAAV EALAAIRAQA DSNRRSKNDE  60
TPFGCSYGGR GGSKGIGLGL GLEECGTKPM VVHYHPHGRV GMHGGGLALV PLPTKPRPLD  120
ITKRRVRRPF SVVEVEALVH AVEKLGTGRW RDVKIQAFEQ AKHRTYVDLK DKWKTLVHTA  180
RIAPHQRRGE PVPQELLERV TRAHTYWTTQ AAKQQAELDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-491112171107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and roots. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}.
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401065.11e-150uncharacterized protein LOC112294623 isoform X3
RefseqXP_024401067.11e-150uncharacterized protein LOC112294623 isoform X5
SwissprotQ6R0E31e-48TRP5_ARATH; Telomere repeat-binding protein 5
SwissprotQ9C7B11e-48TRP3_ARATH; Telomere repeat-binding protein 3
TrEMBLA0A2K1J3S01e-161A0A2K1J3S0_PHYPA; Uncharacterized protein
STRINGPP1S98_6V6.11e-141(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-42TRF-like 2
Publications ? help Back to Top
  1. Hwang MG,Cho MH
    Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding.
    Nucleic Acids Res., 2007. 35(4): p. 1333-42
    [PMID:17272298]
  2. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]