PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_14230V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family DBB
Protein Properties Length: 385aa    MW: 41253.6 Da    PI: 7.2148
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_14230V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.3e-065294541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e++++   C  ++  lC +C +  H        H +vp
  Pp3c17_14230V3.4.p 52 QCDVCEKNKAAVMCCADEAALCTSCDTRVHAAnklankHVRVP 94
                        7******99*********************6577887887777 PP
2zf-B_box32.61.6e-10100142238
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         e+++C+ ++ek+  +fC +++ llC+dC +++H+       H+
  Pp3c17_14230V3.4.p 100 EPPRCDICQEKPGFFFCLEDRALLCRDCDVSIHSAnklssnHQ 142
                         579******************************6556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-114895IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0684895IPR000315B-box-type zinc finger
CDDcd000211.18E-75195No hitNo description
SuperFamilySSF578452.13E-595137No hitNo description
SMARTSM003364.8E-1999146IPR000315B-box-type zinc finger
PROSITE profilePS501199.22999146IPR000315B-box-type zinc finger
PfamPF006431.2E-8101142IPR000315B-box-type zinc finger
CDDcd000218.93E-12102146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLVKLRTHVE FGHSAAPFTT CSASWRQVYA VVLDNNLNLQ EIHQKAVRMR VQCDVCEKNK  60
AAVMCCADEA ALCTSCDTRV HAANKLANKH VRVPLVGQLE PPRCDICQEK PGFFFCLEDR  120
ALLCRDCDVS IHSANKLSSN HQRFLLTGTR VGLDSISGQE GAEVVLEESP RVPTPSTATS  180
TLPSISKSTL SSGSKLKDNS QPVPANATPT PNPSWLTNGG RNSERAKIKS KPVGTTSANV  240
SDPHGSSFGK RNSIPADFLS DAVPVWGVDE LLNLPELAEG YHIGDIGSSK ADMNNLGDYD  300
WMADLSMFEE QMYAAGSFHE VPQLSAPAPT VGLTRGGRAT ALSKGKGKQD AAIVPQFDDA  360
FVVPDLGLSV SPSSPAPVTK RRRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.52560.0gametophore| protonema| sporophyte
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401288.10.0B-box zinc finger protein 24-like
RefseqXP_024401289.10.0B-box zinc finger protein 24-like
TrEMBLA9SNT60.0A9SNT6_PHYPA; Predicted protein
STRINGPP1S98_84V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-47light-regulated zinc finger protein 1