PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_18350V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Dof
Protein Properties Length: 187aa    MW: 21389.2 Da    PI: 9.8706
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_18350V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof30.11e-096799439
              zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrry 39
                        + ++c rC st+ kf y nn   +qPry C++Cr y
  Pp3c17_18350V3.1.p 67 RPKACQRCGSTDVKFKYLNN--KKQPRYECRTCR-Y 99
                        5679***************8..58*********6.5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.4E-86998IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPQPLASCLW TTVRTTRWRC EMDRRHSCST SPRDRRINME SPSSSRRPTE ARPRNREAQE  60
PEEFANRPKA CQRCGSTDVK FKYLNNKKQP RYECRTCRYG GRGPILVQPL PHETAPLERI  120
PPDPNLRTHR IHGPDQSLPS MQIIYSCEVS GPQQQKPEAA AVSVPKMQTQ LLTVQDERTS  180
SQKGHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1J4H21e-134A0A2K1J4H2_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45610.19e-06Dof family protein