PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_19947V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 117aa    MW: 13387.6 Da    PI: 9.2161
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_19947V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-17547145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        + +W++eEd ll+++++ +G++ W+ Ia++++ gRt++ +k+r++
  Pp3c17_19947V3.1.p  5 KSSWSAEEDHLLLQGHNAFGNR-WTEIAKMVP-GRTDNAVKNRYN 47
                        578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.046154IPR017930Myb domain
SuperFamilySSF466892.58E-16353IPR009057Homeodomain-like
SMARTSM007171.7E-15452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-19452IPR009057Homeodomain-like
PfamPF002492.1E-16547IPR001005SANT/Myb domain
CDDcd001674.50E-12749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MCMNKSSWSA EEDHLLLQGH NAFGNRWTEI AKMVPGRTDN AVKNRYNALC TKRSHSTLKA  60
GNGYNAASTG RIHHIEEAWN EANAYWHGHD SKRTKRRNQD DDEDDDGRRR RFFGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1535357107B-MYB
1idy_A1e-15148148MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A1e-15148148MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194110KRRNQDDDEDDDGRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400443.14e-82transcription factor MYB3R-5-like isoform X1
RefseqXP_024400445.12e-82transcription factor MYB3R-5-like isoform X3
RefseqXP_024400446.12e-82transcription factor MYB3R-5-like isoform X3
TrEMBLA0A2K1J4P72e-81A0A2K1J4P7_PHYPA; Uncharacterized protein
STRINGPP1S65_233V6.12e-82(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54161421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-17MYB family protein