PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_19970V3.1.p
Common NamePHYPADRAFT_210806, WRKY7
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 386aa    MW: 42429.6 Da    PI: 10.2041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_19970V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31327383358
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ed +++++tYegeHnh
  Pp3c17_19970V3.1.p 327 DEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERSMEDSTMLIVTYEGEHNH 383
                         9************************9988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-14278323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.4E-33314383IPR003657WRKY domain
PROSITE profilePS5081130.308320385IPR003657WRKY domain
SuperFamilySSF1182904.05E-26323383IPR003657WRKY domain
SMARTSM007741.2E-36325385IPR003657WRKY domain
PfamPF031061.3E-26327383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGAMEILDYN NTLGKRDRDY EVKEAARVGI ENARQLLQSL TQVQPPVVEE EYDMMAGTAI  60
SKFQKVVSLL TRTGHARFRR RTRDAVTASY AGVFLESSNF CTDNTQDASR DRIVSSGHPS  120
PSPFKSTFTP TSSSKHPQSP EPQRTLYQVF PVSSTSAGET SSPTEHAMGV HHPNPHQILH  180
SSMMQQDLSE HMQRLATASY RSAAPRSKSF SKQETGSKET GGGNSPDSSL SSGPPQSATT  240
MPFSTMSVHD ARAAGQQNVK SVEPPSALPP RPQPSNPRKK CSGKSDKNGA TCAILGRCHC  300
SKRRKLRSKR TITVKAISTK LADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSIRGCPAR  360
KHVERSMEDS TMLIVTYEGE HNHLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-223213831071WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896261e-115DQ889626.1 Physcomitrella patens WRKY transcription factor 7 (WRKY7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400156.10.0probable WRKY transcription factor 17
TrEMBLA9SCG70.0A9SCG7_PHYPA; Transcription factor WRKY7
STRINGPP1S65_236V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-52WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]