PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_23070V3.3.p
Common NamePHYPADRAFT_77982
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 546aa    MW: 59260 Da    PI: 6.9546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_23070V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09358405455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  Pp3c17_23070V3.3.p 358 SHSLAERVRREKISERMKYLQDLVPGC-----RKvTGKAVMLDEIINYVQSLQ 405
                         8*************************9.....67799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-10352409No hitNo description
Gene3DG3DSA:4.10.280.106.2E-17354418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6358405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAIMAPAPDQ AFMNLYSNMS GAVPILHPSS DSNELSSNLE KIVEHSACGI YPYSGPSTAS  60
ALQYPSWHPI QEMPITSNSN FGYGVPEIQR STLSNDRPNP SHSRFSSTLP PSSRGLSASR  120
GIMEEVRMRD VIGKPGRNLG AQRPSLWSSM ETGGITVDPF RGGLALHGVP SEVDNLAQIT  180
SDSAFVERAA KFSTFGTRTG EYVPEMLQRP AAGFVAATTK SVPGDVREES KCIAIDTIPE  240
LQPGSQGEIS PDTISPARST PPQDEPASRN KRKKPSTIDN DLASPDPKVG DVENSKAKRC  300
KGEDTKSDCK GERSSSEISS ESAGSPKVPQ KENNQKAKEF SKQDYIHVRA RRGQATDSHS  360
LAERVRREKI SERMKYLQDL VPGCRKVTGK AVMLDEIINY VQSLQRQVES LSMKVASVNP  420
THSGRLTLES RLSNEDIIQS QLSSIHGSSD SSINAAAFGS HHLQQQSELL LNVYCGFDHL  480
QANLGNCFDI SSHHTTNPPI GRLAEMQSMV RSFDNNLVSQ SSGWDGSPQS VNVHMGQLYQ  540
QSGHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.82110.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401025.10.0transcription factor bHLH76-like isoform X2
TrEMBLA0A2K1J5640.0A0A2K1J564_PHYPA; Uncharacterized protein
STRINGPP1S68_190V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-46bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]