PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_23200V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GATA
Protein Properties Length: 364aa    MW: 39561.3 Da    PI: 7.0403
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_23200V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.1e-16276312135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pp3c17_23200V3.5.p 276 CVHCGIGErsTPMMRRGPAGPRTLCNACGLMWANKGV 312
                         ****866666************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.798132167IPR010399Tify domain
SMARTSM009795.7E-12132167IPR010399Tify domain
PfamPF062002.0E-14134166IPR010399Tify domain
PfamPF062033.7E-15200242IPR010402CCT domain
PROSITE profilePS5101713.096200242IPR010402CCT domain
SMARTSM004013.5E-11270323IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.827270318IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11273319No hitNo description
Gene3DG3DSA:3.30.50.109.9E-16275317IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440276303IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13276312IPR000679Zinc finger, GATA-type
CDDcd002024.16E-15276318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRTEEVDVGG MSNADHLVHA QSLQLHHNIH QHSLNHALGH AQHGMHEMHV HGHGHGEADG  60
QGRVDQRVQG HLEGDHVHGH HGHGMHRGEE NAAGVEEHDD DAGDEEGLDE ADMHSDGGGG  120
NPGDPPVALA ARTQGSTQLT LSYQGEVYVF DTVPPEKVQA VLLLLGGREI PPGMSGGNVS  180
SHHHHKGMPE LPTRMNMPQR LASLTRFREK RKERCYDKKI RYTVRKEVAQ RMHRKKGQFA  240
SSRPTQEEGA PAANWDGTQA SGQLLGPGGV QPEVMCVHCG IGERSTPMMR RGPAGPRTLC  300
NACGLMWANK GVLRDLSKNL PLAAGGQQQL MLHPPQIILE QQQHQIAGLQ HSVENVSRVV  360
VKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119360.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400206.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024400207.10.0GATA transcription factor 28-like isoform X1
SwissprotQ8H1G03e-77GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2K1J5890.0A0A2K1J589_PHYPA; Uncharacterized protein
STRINGPP1S68_204V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-78ZIM-LIKE 2