PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_23560V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 471aa    MW: 49747 Da    PI: 8.24
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_23560V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.76.1e-3452106155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+rlrWtpeLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Pp3c17_23560V3.2.p  52 KQRLRWTPELHDRFVDAVTQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 106
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.38849109IPR017930Myb domain
SuperFamilySSF466897.17E-1850106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-3251107IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-2652107IPR006447Myb domain, plants
PfamPF002493.8E-954105IPR001005SANT/Myb domain
PfamPF143793.3E-25139185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MYQNKKFSTT SLMPQRSASQ ALELRGSSAA GASVNSAGSP GGGSGGGGSA TKQRLRWTPE  60
LHDRFVDAVT QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH LQKYRLAKYI PESLSDGGKS  120
DKKNNPTDLL PTLDATSGIQ ITEALRMQME VQKRLHEQLE VQRHLQLRIE AQGKYLQKII  180
EEQQRVGSLN NRPGVTTDSA TPTVTDTTQG QVGLVNTKPA LPLTSVPQSD TLASNSLPPV  240
PVSTSNTRLT QATILPPQQP FQTQYGFETF ANPPALEGSP VQGASKRTRT EDRGGQSLAG  300
QSEPQQVSGV PQPGGPFLQP GQTQGSGGGA FHPSQSDFAS GATFSPRQGG RSFSQAPLSQ  360
QAYSQQPLPG VFNSQSFHPA NHANIYLPTQ AQCTEAQAPP DNSTSGSTRP PQEVSGKLDT  420
GAFLTNEREV ALPASEGDGG HRSAGPLSQA AIYEQWDHVG SDGQLCNEGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2452109158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400664.10.0uncharacterized protein LOC112294460 isoform X1
RefseqXP_024400665.10.0uncharacterized protein LOC112294460 isoform X1
TrEMBLA0A2K1J5920.0A0A2K1J592_PHYPA; Uncharacterized protein
STRINGPP1S68_240V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-74G2-like family protein