PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_23620V3.1.p

Common Name

PHYPADRAFT_78012

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 264aa MW: 29982.8 Da PI: 8.6509

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_23620V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	83.7	2e-26	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l+Wt +LH++F+ av++LGG++kAtPk+i+++m+ +g+t++hvkSHLQ+ R+ Pp3c17_23620V3.1.p 61 HKLKWTLDLHQSFMCAVNRLGGKDKATPKRIVQCMGRDGITIAHVKSHLQMLRT 114 589*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-23	57	114	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.77E-11	60	113	IPR009057	Homeodomain-like
Pfam	PF00249	9.7E-8	62	112	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.0E-20	62	114	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MALGFDHFNH DRRGDESRIS RRLPSTSRRS TQNIHAVTGE ESLATFKRYR KARPYVRSST 60 HKLKWTLDLH QSFMCAVNRL GGKDKATPKR IVQCMGRDGI TIAHVKSHLQ MLRTGRINEE 120 GMSSADSFPV ADRHPEDSES CMTNLSPTER QADLLREAIE VLKELQSRKY GLLFGAAEAE 180 TLQRRVADSE AFHKHLDNLE THMFVPGKPL DDVVSEETST TPFWKRAQHV DAVECATGRY 240 RNDEEPLELN LTMATGARHL RHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-14	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400245.1	0.0	myb-related protein 1-like
TrEMBL	A9SDS0	0.0	A9SDS0_PHYPA; Predicted protein
STRING	PP1S68_248V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-22	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_23620V3.1.p
Entrez Gene	5927659

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]