PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_23620V3.3.p

Common Name

PHYPADRAFT_78012

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 263aa MW: 29884.6 Da PI: 8.3723

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_23620V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.1	1.9e-23	61	113	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l+Wt +LH++F+ av++LGG++ +tPk+i+++m+ +g+t++hvkSHLQ+ R+ Pp3c17_23620V3.3.p 61 HKLKWTLDLHQSFMCAVNRLGGKD-TTPKRIVQCMGRDGITIAHVKSHLQMLRT 113 589***************9988.9************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-22	57	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-11	60	112	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-8	62	111	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.2E-18	62	113	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MALGFDHFNH DRRGDESRIS RRLPSTSRRS TQNIHAVTGE ESLATFKRYR KARPYVRSST 60 HKLKWTLDLH QSFMCAVNRL GGKDTTPKRI VQCMGRDGIT IAHVKSHLQM LRTGRINEEG 120 MSSADSFPVA DRHPEDSESC MTNLSPTERQ ADLLREAIEV LKELQSRKYG LLFGAAEAET 180 LQRRVADSEA FHKHLDNLET HMFVPGKPLD DVVSEETSTT PFWKRAQHVD AVECATGRYR 240 NDEEPLELNL TMATGARHLR HH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400245.1	0.0	myb-related protein 1-like
TrEMBL	A9SDS0	0.0	A9SDS0_PHYPA; Predicted protein
STRING	PP1S68_248V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-19	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_23620V3.3.p
Entrez Gene	5927659

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]