PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_24040V3.1.p
Common NamePHYPADRAFT_235397, PPTIM1
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 245aa    MW: 26842.2 Da    PI: 7.4408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_24040V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.7e-1318521044
                        HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        + tfskR+ g++ KA+ +  LCd++va+i+f ++g
  Pp3c17_24040V3.1.p 18 NSTFSKRKDGLMNKAKQMGSLCDVDVALIVFCPRG 52
                        569*****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-7161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-14177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.876152IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-121852IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRLKIDVDK KRPASKINST FSKRKDGLMN KAKQMGSLCD VDVALIVFCP RGDDVIDVSH  60
GGTIDEVYQR YVRFRQRHNR PQQLVYRPRT GPRGHQEAPD PHPAGNVHSL NLPGPAHDLD  120
GPYGLFPDAA AGGGGERGGG DGEGRGGAEL QAGGIPLSPN EAFELYLNLK AQMETVSQYL  180
DLQHRQQVNQ QQALPPPPPH PFPPMQQQQQ HLPQDVMAPP HHFLPNPPPF NADALFHNPN  240
PFPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400982.11e-177myocyte-specific enhancer factor 2B-like
TrEMBLA9SDU71e-176A9SDU7_PHYPA; Type I MADS-domain protein PPTIM1
STRINGPP1S68_293V6.11e-177(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-13AGAMOUS-like 66
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]