PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_2880V3.2.p

Common Name

PHYPADRAFT_168893

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1044aa MW: 113332 Da PI: 6.3908

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_2880V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.3	8.4e-15	569	607	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaa+++C +C C +C+Nk e Pp3c17_2880V3.2.p 569 CKRCNCKKSKCLKLYCECFAAREFCVGSCACRNCFNKPE 607 79**********************************976 PP
2	TCR	51	2.9e-16	653	691	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+N Pp3c17_2880V3.2.p 653 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCRNM 691 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.6E-14	567	608	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.276	568	693	IPR005172	CRC domain
Pfam	PF03638	2.5E-10	570	605	IPR005172	CRC domain
SMART	SM01114	8.1E-19	653	694	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.0E-11	655	691	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MFAMNSTQLN SEPTNCETDR IAATTANFQT QFTDYQPLDQ VASAAMPSDM ARYTEDIGEK 60 PGGARSERSD PSERRQSTSS LISQTNDSVM PSILSQESKC AEYDDQRRVS MTCSSVNEDH 120 GFSYSPIAKG SLELDQDTAA MTYLLAGNRD VGQINGKEWS ENSSEVDVSR LPYQAASVSS 180 ENQADTMNEG TEKQERRVLD AMTSQSGFGA STDVRRDTET NLTTEDAGRE HSLPPQRADT 240 AGQRGFRRRC LDFDVARRKS FGSMGGRKSL GSRLKDCSGI DGNNTSVLGD GMRPASDATR 300 TRVQIHVDAS RTATDSVMHT GGVLAREDNL GTMTRMQQLT NSTYQNKMDI MYAKTGESHA 360 RNSQYSGVTP GVNSPDGVRR SPRVHKSGIG LHLNSLTSSM SFKRNPPSTE GESSKGVLAT 420 VLGLQPLTSP SPREDSGGEG LSSAGYPANL NQSFNSGMGS SLERRIEIET NSADAAFSSD 480 KKVVIPTPDF TGLNIENLAP LEDSLPLTPV TTSPRDQERS QPYQQELTWQ AEGEVTHELL 540 DSPQSSKNRR LSRRKSTASS QGEKPGDGCK RCNCKKSKCL KLYCECFAAR EFCVGSCACR 600 NCFNKPEYEA TVLNTRQQIE SRNPLAFAPK IVQAPESSPI PGDEALDTPA SARHKRGCNC 660 KKSLCLKKYC ECYQAGVGCS EGCRCEGCRN MYGRKEGPEE GEAKEKDQVN LTVDKSQAED 720 PIELFNSMSG KPDRLRDHGK SNPSPITPTF EYDGLGEPMS RLRSTGRKRA SSDDQCGSPL 780 AQPASRPPKS PTRFSSTLDA FDLVPYPQED TDFSICGAGD SPMTTPTFAR IAHISRWEGL 840 SDLSTLTPLS MTTLQPTPGS CVTTERPDTS PAFTSQMTET SFHSASATSA HHHASSRIWS 900 SQIPEFRHPD PQSPNRFDTP HQAQLSSTDD LDSTTRTSTV HPGKNLHNEL ESVKTAADDD 960 GTPYFLKYGD DFSSPTRSTV TKSNSPKQKR VTPPRYADSR DQASSGGCGN SLASPPGLRN 1020 TKKFILQALP SLPSAAPSSF SNG*

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MFAMNSTQLN SEPTNCETDR IAATTANFQT QFTDYQPLDQ VASAAMPSDM ARYTEDIGEK  60
PGGARSERSD PSERRQSTSS LISQTNDSVM PSILSQESKC AEYDDQRRVS MTCSSVNEDH  120
GFSYSPIAKG SLELDQDTAA MTYLLAGNRD VGQINGKEWS ENSSEVDVSR LPYQAASVSS  180
ENQADTMNEG TEKQERRVLD AMTSQSGFGA STDVRRDTET NLTTEDAGRE HSLPPQRADT  240
AGQRGFRRRC LDFDVARRKS FGSMGGRKSL GSRLKDCSGI DGNNTSVLGD GMRPASDATR  300
TRVQIHVDAS RTATDSVMHT GGVLAREDNL GTMTRMQQLT NSTYQNKMDI MYAKTGESHA  360
RNSQYSGVTP GVNSPDGVRR SPRVHKSGIG LHLNSLTSSM SFKRNPPSTE GESSKGVLAT  420
VLGLQPLTSP SPREDSGGEG LSSAGYPANL NQSFNSGMGS SLERRIEIET NSADAAFSSD  480
KKVVIPTPDF TGLNIENLAP LEDSLPLTPV TTSPRDQERS QPYQQELTWQ AEGEVTHELL  540
DSPQSSKNRR LSRRKSTASS QGEKPGDGCK RCNCKKSKCL KLYCECFAAR EFCVGSCACR  600
NCFNKPEYEA TVLNTRQQIE SRNPLAFAPK IVQAPESSPI PGDEALDTPA SARHKRGCNC  660
KKSLCLKKYC ECYQAGVGCS EGCRCEGCRN MYGRKEGPEE GEAKEKDQVN LTVDKSQAED  720
PIELFNSMSG KPDRLRDHGK SNPSPITPTF EYDGLGEPMS RLRSTGRKRA SSDDQCGSPL  780
AQPASRPPKS PTRFSSTLDA FDLVPYPQED TDFSICGAGD SPMTTPTFAR IAHISRWEGL  840
SDLSTLTPLS MTTLQPTPGS CVTTERPDTS PAFTSQMTET SFHSASATSA HHHASSRIWS  900
SQIPEFRHPD PQSPNRFDTP HQAQLSSTDD LDSTTRTSTV HPGKNLHNEL ESVKTAADDD  960
GTPYFLKYGD DFSSPTRSTV TKSNSPKQKR VTPPRYADSR DQASSGGCGN SLASPPGLRN  1020
TKKFILQALP SLPSAAPSSF SNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-22	556	699	4	126	Protein lin-54 homolog
5fd3_B	4e-22	556	699	4	126	Protein lin-54 homolog
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400757.1	0.0	uncharacterized protein LOC112294496
TrEMBL	A0A2K1J2K2	0.0	A0A2K1J2K2_PHYPA; Uncharacterized protein
STRING	PP1S29_305V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	5e-48	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c17_2880V3.2.p
Entrez Gene	5938748

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]