PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c17_3450V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 227aa    MW: 25359.5 Da    PI: 4.5652
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c17_3450V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-184498155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       s+y+GVr ++ +grWv+eIr+p  +  ++ r++lg+f +aeeAa a++aa ++l+g
  Pp3c17_3450V3.1.p 44 SRYRGVRLRP-WGRWVSEIREPQRRDsRTYRIWLGSFRSAEEAAHAYDAALLCLRG 98
                       79********.**********96655677*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1944106IPR016177DNA-binding domain
PfamPF008473.8E-124498IPR001471AP2/ERF domain
CDDcd000183.22E-2844107No hitNo description
SMARTSM003802.5E-3145112IPR001471AP2/ERF domain
PROSITE profilePS5103222.87945106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2845107IPR001471AP2/ERF domain
PRINTSPR003674.4E-94657IPR001471AP2/ERF domain
PRINTSPR003674.4E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSSINSTQDH VAIEKLSADR IVFLDVKFAV TNCRGEEMSG GGSSRYRGVR LRPWGRWVSE  60
IREPQRRDSR TYRIWLGSFR SAEEAAHAYD AALLCLRGSS ANLNFPNFNY RLPPGIPGRY  120
STREIQAAAS AAAAQSAGRQ FSYDNFMSPT SPSESEEEVE DITYPGNSSH VQYQTQSSQP  180
SYNYNSDDDP RNQMNRIAQA MLIDPPNHDS DDTDESSDDD DPPLWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16441161381Ethylene-responsive transcription factor ERF096
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401252.11e-104ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2K1J2L31e-167A0A2K1J2L3_PHYPA; Uncharacterized protein
STRINGPP1S26_306V6.11e-138(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-13ERF family protein