PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c17_6370V3.2.p

Common Name

PHYPADRAFT_160775

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 316aa MW: 35732.1 Da PI: 8.6686

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c17_6370V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.7	4.7e-11	49	152	2	80
trihelix 2 WtkqevlaLiearremeerlrrgk.........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 Wt +e l+L ++rre+ er +g ++ +W++ ++++ +g++rs+ qC++kwe + +kk+++ e Pp3c17_6370V3.2.p 49 WTVSELLVLQAVRREDFERQAKGGsrekhrvengmwrespevarehhnrSAHERWKWMEDRCWMQGVQRSAGQCQDKWEGITAGFKKVNDYE 140 999999999999996666666543344566666667777777777888799***************************************** PP trihelix 69 kkrtsessstcp 80 k+ t ++ s ++ Pp3c17_6370V3.2.p 141 KQLTIGQPSYWQ 152 *99877776664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-6	72	144	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLSVAGMASH GESMPSVVLD NKDAIHVAEA LTDELQVDDG IRHYKKGMWT VSELLVLQAV 60 RREDFERQAK GGSREKHRVE NGMWRESPEV AREHHNRSAH ERWKWMEDRC WMQGVQRSAG 120 QCQDKWEGIT AGFKKVNDYE KQLTIGQPSY WQLGSDDKKK LRLPPNFHKE VFTALQEWYV 180 KSRTGEPGVL FDALAPSRGV ASNMDFSGSA GESDENDAGP ISSGKRRRSG PSKFGSMDGI 240 AAVLERNNRN IVDALRLAED RKDNRHKQTL QFEREKHRDL IELQKQLGSG YITALNRIGD 300 ALDKFAMAMQ ASSRH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024400068.1	0.0	trihelix transcription factor ASR3-like isoform X1
TrEMBL	A0A2K1J2X3	0.0	A0A2K1J2X3_PHYPA; Uncharacterized protein
STRING	PP1S26_50V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-21	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c17_6370V3.2.p
Entrez Gene	5920318

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]