PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_14540V3.2.p

Common Name

PHYPADRAFT_64729

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 245aa MW: 27354.7 Da PI: 8.665

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_14540V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.6e-09	169	223	2	45
SSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwq 45 ++WT eE ++l+++v+q + +W Ia+ + gRt+ +c+ r + Pp3c18_14540V3.2.p 169 KNWTDEEMKRLLEVVAQRKSVksrfekhfgrkrSWGDIAENAP-GRTGVECRMRMN 223 68*************99779*****************.******8866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-10	167	227	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-5	167	228	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.38E-7	167	225	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-7	169	224	IPR001005	SANT/Myb domain
CDD	cd00167	2.16E-7	170	225	No hit	No description
PROSITE profile	PS50090	7.631	170	226	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MHSVSDDPMI WESLLPYLKT LDKFVLAARA EEIQREQPEN AVDENCIDAA AGDMNVTEIG 60 AMGAAVVDQY HSADQDATSK PGGRLKAQFP DKVGPTTFTN PHRKDQVIEL QYEGCDENYS 120 LKSRTGGTAG EAKGKAEGSK KRRRCGTGEI DGAENEKTKG EKTCKNRSKN WTDEEMKRLL 180 EVVAQRKSVK SRFEKHFGRK RSWGDIAENA PGRTGVECRM RMNTVTKSCK TIKQFCENKN 240 KEFR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024401778.1	0.0	uncharacterized protein LOC112294978
TrEMBL	A0A2K1J134	0.0	A0A2K1J134_PHYPA; Uncharacterized protein
STRING	PP1S3_360V6.1	1e-133	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c18_14540V3.2.p
Entrez Gene	5915461

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]