PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_1910V3.1.p
Common NamePHYPADRAFT_160016
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 132aa    MW: 14798.8 Da    PI: 7.8761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_1910V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-125478226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k+++C ff+rtGtC+yG+ C+F H+
  Pp3c18_1910V3.1.p 54 KRPPCTFFLRTGTCQYGSECRFEHP 78
                       89**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-17461No hitNo description
PfamPF062206.3E-11538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010316.0045280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-75280IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-65379IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-105478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-65677IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPAHKYYCDY CDKQFYDTPA SRKRHLQGIA HQRAKKQWFD SFRDQESGLP QDAKRPPCTF  60
FLRTGTCQYG SECRFEHPVQ PPAPSAPGPF EALNVAPESS ALPNLLMKDL PLSLRPPPEG  120
GYPPLPPVEW G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402660.15e-93zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP111e-31C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2K1IZP41e-91A0A2K1IZP4_PHYPA; Uncharacterized protein
STRINGPP1S17_322V6.12e-92(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85391213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-16C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]