PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c18_19850V3.2.p

Common Name

PHYPADRAFT_161497

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 264aa MW: 29815.1 Da PI: 4.2671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c18_19850V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.2e-10	66	109	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 E++ R+riN+ fe Lr +P+ + Ka+iL+ A eYIk+L+ Pp3c18_19850V3.2.p 66 VLEQKKRSRINEQFELLRAAIPSsC------TDVKASILTGAYEYIKKLE 109 689******************66......567899********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.699	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-13	65	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-8	66	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	66	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-8	66	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MALNMGMPME YNDALDHCNY VDQEYWSDLT DTESNDDYTF TPRAFEHIVP RSSKRTYGVF 60 FASEAVLEQK KRSRINEQFE LLRAAIPSSC TDVKASILTG AYEYIKKLER QVQDLQHELD 120 AESCCEDDAS YSDDDLSTCE VDLRQWFTEE KRPVGCNAAS EAELTSCHGC PQPTVEVVQT 180 QGRLKIHVEC EKRSGLLVDI MEVLESSGLN VEQASITCQE HLVFDGVGSE VEEDDGAECR 240 RVSYVNAEHV ESRLRCLIVK QKD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10442	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403267.1	0.0	transcription factor SCREAM2-like
TrEMBL	A0A2K1J1P6	0.0	A0A2K1J1P6_PHYPA; Uncharacterized protein
STRING	PP1S33_238V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	6e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c18_19850V3.2.p
Entrez Gene	5921779

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]