PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_19990V3.2.p
Common NamePHYPADRAFT_71631
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 268aa    MW: 29274.5 Da    PI: 3.9824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_19990V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.00057691081054
                         HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         rr R+ri   f+ L ++ P+ +         Ka+iL+ A eYI +L
  Pp3c18_19990V3.2.p  69 RRLRSRIDWQFDVLMTIAPNlC------TDVKASILTCANEYIEKL 108
                         89999***************55......567899*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-469116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-569120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.52184267IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALTTGVAVD CSGAVGYCDH AEEGYASDLT DVESDEDYSC SPEVFEHGVA RGSKRTCGVF  60
VDSEAVPSRR LRSRIDWQFD VLMTIAPNLC TDVKASILTC ANEYIEKLLR QVQELQYDLV  120
YESSFESDFS CCEDDQSSCE CDTSLHCTEE RAVDSNVSLE SICLSNCDCS QPTVEVVRTE  180
QGLNIHIECV KRPGLLVDIM ELLESSGLNV EQASIICQEH LIFDGLGSEV EDNDAGVCRH  240
VSCVSAEDVG ASLRSLIVDH RPAFLTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401880.10.0transcription factor SCREAM2-like
TrEMBLA0A2K1J1P80.0A0A2K1J1P8_PHYPA; Uncharacterized protein
STRINGPP1S33_223V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-13bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]