PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_21380V3.1.p
Common NamePHYPADRAFT_161460
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 577aa    MW: 63074.8 Da    PI: 7.0886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_21380V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043261285123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++C+   C+k+F+++ ++k H +tH
  Pp3c18_21380V3.1.p 261 FRCQheGCNKTFKNPQTMKMHHKTH 285
                         89**********************9 PP
2zf-C2H215.16.8e-05316338223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C+k+F   ++L+rH  + H
  Pp3c18_21380V3.1.p 316 RCPKCKKTFVGLYELRRHYGRkH 338
                         7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-6257286No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8259288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783261290IPR007087Zinc finger, C2H2
SMARTSM003550.003261285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263285IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473315344IPR007087Zinc finger, C2H2
SMARTSM003550.12315338IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.33E-7315365No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4316350IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280317338IPR007087Zinc finger, C2H2
SMARTSM00355180345365IPR015880Zinc finger, C2H2-like
SMARTSM00355210371392IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MALAATPALS TFYGMEATNL LQAPNFSGNP SYMLNDAGPL SLGYGFSSGG SSLYNYGDNA  60
ALAVSWDAYL TRDCSNFNPP NTLSQSLSFS DSSVYSTDES DLFMSNNSDE LFQLINECNL  120
LSAGSSVSTI HPNLVSTLKN MVSPGLVGSC ISQGDMTCHN AQAAVLDQLA LTQTWMEQHQ  180
QEQLQHDNID SLRSALMRHS QPQVMVPKVE LHDFTSTVGA MVPMATISDL KPQKADEKSE  240
TEDSIEAAVV SLDLIKNRRP FRCQHEGCNK TFKNPQTMKM HHKTHYSDGS AASKACMLPT  300
LSSSLKAGHN KKIPSRCPKC KKTFVGLYEL RRHYGRKHSE GEKPFGCRKC GKKFYIEVDV  360
RDHEKLCGEP IECKCGLKFA FKCNLVAHKK AHPACQDHLL NNSNSTTSNN QSSYSDDSEQ  420
SPCSLRSSPR SGTKRAREPA SPIQSSLHVP LPDFEGIPEA PAFKMARHDL AWMSFPTDTS  480
LLCASNVNYP PISFTNLPLS SRYPNQGDSQ EHFSSKVHPI SSTYPEAVNC EMGIVSTNSP  540
LRHGPADVAS LPSAPTKSAT PWANFFYSFS HEAVSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.31560.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402898.10.0zinc finger protein 184-like isoform X1
TrEMBLA0A2K1J1W80.0A0A2K1J1W8_PHYPA; Uncharacterized protein
STRINGPP1S33_92V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-13WIP domain protein 5
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]