PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_22010V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 716aa    MW: 78561.9 Da    PI: 5.4643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_22010V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028192214123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C++ F +   L++H ++H
  Pp3c18_22010V3.2.p 192 YRCGICNEEFGSAKRLHSHRKNH 214
                         9********************99 PP
2zf-C2H215.35.9e-05263282221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk Fs++  L  H+r
  Pp3c18_22010V3.2.p 263 PCTECGKEFSSWKALFGHMR 282
                         5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743192214IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-8192214No hitNo description
SMARTSM003550.025192214IPR015880Zinc finger, C2H2-like
PfamPF139120.056192216IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-8257284No hitNo description
PROSITE profilePS5015710.18262289IPR007087Zinc finger, C2H2
SMARTSM003550.0052262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4264284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.1E-8264286IPR007087Zinc finger, C2H2
SuperFamilySSF576674.77E-7512534No hitNo description
PROSITE profilePS501579.93512539IPR007087Zinc finger, C2H2
SMARTSM003550.61512534IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-8512536IPR007087Zinc finger, C2H2
PROSITE patternPS000280514534IPR007087Zinc finger, C2H2
SuperFamilySSF576674.77E-7613640No hitNo description
PROSITE profilePS501579.203618640IPR007087Zinc finger, C2H2
SMARTSM003550.43618640IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-12618642IPR007087Zinc finger, C2H2
PROSITE patternPS000280620640IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDLEREDMMP GAISGGDNEW KISIDGGKKA EEDNLGVSTV EGMDIDQPSE TNNSTGVKGE  60
LGEVIEREAG IEDYCSKADV SSSIDNASVI KQDPMHESSL GHPLLRPSRS DAPRSRLRTV  120
IGGRTRSGSL SSQRSSAKSG LHSAAPPNSK VNQDKGNRKR SEDGDELRRS SSSEELNDDE  180
YGDGDQADVV CYRCGICNEE FGSAKRLHSH RKNHPQYTLR RNPKRSRKMI DQEVVVDVGG  240
TTPMVQGLEI VKTSSVTEDL PKPCTECGKE FSSWKALFGH MRCHPEREWR GIQPPAEETN  300
ARRPDGGGNH SNSIRRRRRR RRRAAPVAQL HPPAALVRED DVENSASVDS RRAAHEASKA  360
SDNESDTESI EAAYMSNGDR DIGYGTTWSK RSKRSRQTHC SPDAPSNVKT EQFSCSQDNT  420
ASESNDMAET LMMLQVQANL QADHSKERNM PASTPESHVS KSRTPESGVE AETDEVDLRD  480
VKDEAASLCG DTEEGADEFD AGVHGSNARS KYECATCKRQ FKSHQALGGH RASHKKVKGC  540
FARTNPGDGS AHDHSTETST DADDDMEFHA KSEVQFPEEL RETSHTSIEE EDRPLSYLTA  600
ARADNEEMQM TAHKSKSHEC SICHRVFNSG QALGGHKRCH WSGGSGAGEV TSAKPVQSQE  660
ELEGGPQRRP VKEAVLDLNL PAPEFLEEEM AQQQDAVVPL NYLPAPSLNL YPIYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314322RRRRRRRRR
2315322RRRRRRRR
3316322RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024403244.10.0uncharacterized protein LOC112295637
TrEMBLA0A2K1J1Z60.0A0A2K1J1Z6_PHYPA; Uncharacterized protein
STRINGPP1S33_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-22C2H2-like zinc finger protein