PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_6880V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 462aa    MW: 49630.4 Da    PI: 5.7722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_6880V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11392437655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L++l+P+      k  + a++L ++veY+ksLq
  Pp3c18_6880V3.5.p 392 SIAERVRRTRISERMKKLQDLVPNM----EKTTNTADMLDETVEYVKSLQ 437
                        689*********************7....366*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.38386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15389452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-11390441No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15391453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8392437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGSLDEEISA MLQSSHASFS DASLAGVMAT ETSTNPDIFV SLTSHISPYP GTLPTNFHHG  60
GLARTSSMSS AGLVNNSRLP NLRPSQPHQG WPVPMDGDEK WILDAKGEVL DMHANSSFGA  120
VCDGFMPIMS QAPAPAPGPP GGGLHRYHSA PSAFMQALAD DAFSQIPSSL GNSTFDPLFT  180
EGGLTSISEQ MDVERTDSGS SMNGFEQFLS PDSDFSRRAA MSALGAVKTQ NADTFTSLFP  240
PAKSTELVRQ KSVPVAEKRK PKPDITKILE EHQSEDSISG TSEDNSLLSG LKAAMYSQDD  300
LLNNDTVTSM PTSPGTPGGK RQRGFVGENE ISSGSELNSK SYRLNNNQST GLIRHMSLPT  360
SGDVPNMSLN TDDHYVQMRA RAKRGCATHP RSIAERVRRT RISERMKKLQ DLVPNMEKTT  420
NTADMLDETV EYVKSLQVKV SELQETIAKL KAASATQITS S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.52520.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402763.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024402764.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024402765.10.0transcription factor bHLH130-like isoform X1
RefseqXP_024402766.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2K1J0680.0A0A2K1J068_PHYPA; Uncharacterized protein
STRINGPP1S185_120V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-32bHLH family protein