PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_7410V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 900aa    MW: 94250.5 Da    PI: 7.8951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_7410V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07806855147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++ +E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Pp3c18_7410V3.2.p 806 RRPFSVQEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 855
                        6799**********************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.084801860IPR017930Myb domain
SMARTSM007174.5E-7805858IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10806856IPR009057Homeodomain-like
SuperFamilySSF466898.97E-14807887IPR009057Homeodomain-like
CDDcd116604.52E-17807857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MEARIRRVGG GFPGYEGPTL PRGLRSQRGR SGDAAKGHGV NLARTGVFEL LATVAGQILQ  60
DARSDDPNGA KQGDGEGARG KSQSGMDSQI SGLDSVKDFT SVDKPQSSGS GNAYAGGVTH  120
VSSVDEVSVE GSNDGESASC GARSPAQEED RGAFVKDVAV DEGSGAVVHT KGSAMEGVVM  180
APVCDSDMSS TQAGGEVGSP RCGVKEMVQV SGTYGGSREV ERYSTEEVGA AATSEGMACD  240
TAAEERTHAA VEVVGEEMVV VEAGVGVKQA SSKSEAVVSE ALVCSKSMEA EGVCGPMDGG  300
GCEGWKRSAT SVAEMQMQCK MSESEEYGES AEVMEEGEEG MEDDDAGSME VEVEVEERKV  360
VVSGKSKGRG GSCGRLAVAS PGVAECKSSR PMVRRVMSRV EGKFYKKEHG YGTSQRVHPE  420
TMTTKLESYS RSLKVRRAVK VAKRNHVGGT RAKRQHAEME STDSGCSEDC GYGKKSYLGG  480
MGAYTRQRTT RGAANKRRKV ADAKAASVAS SPTSRSAKLG SKKSAETHVK LSIKSFTVPE  540
LFVDLPETAS VGSLKRAVMD AAMNLLGGGL RVRVLMQGKK VPDEGATLSQ IGISREAKAE  600
SVGFMLEPSP VVTSSCGTGE DPLLVLSRAA NQPAPRYPVY GVGGVSGMGD GSVRCAMKGR  660
ASKSSGTVVD PDPSYVPPSA SSEQEGYVEG RRSGVAVSVS PEESVKGCNK HVSERMAISA  720
HPTRVAAAGA LAAIRAQADA SRRARNEVES GCTSPESCGQ DSAVGGSGAI ILHPGVSGGE  780
NVGGMALVPL RNKIARALDN GKRRVRRPFS VQEVEALVHA VEKLGTGRWR DVKLRAFEQA  840
KHRTYVDLKD KWKTLVHTAR IAPHQRRGEP VPPDLLDRVT RAHAFWTAHA AKQQADLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-447898961107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402293.10.0uncharacterized protein LOC112295236 isoform X2
TrEMBLA9TRP60.0A9TRP6_PHYPA; Predicted protein
STRINGPP1S299_16V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.18e-45TRF-like 2