PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c18_8490V3.1.p
Common NamePHYPADRAFT_160137
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 636aa    MW: 71506.2 Da    PI: 6.9592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c18_8490V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-09410496354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C.....................................TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.as..................................kapskKlsKaeiLekAveYIksL 54 
                        +ah+ +Er RR + N+++++L +++P  +                                   +  ++  +K+++L+ ++ YI++L
  Pp3c18_8490V3.1.p 410 VAHKLAERDRRFKFNQRMQTLISIVPIiSKvinrfpkftyqvlnisrtdltalslnrvidtltnSLVHPQKDKVSVLTSTIAYIHQL 496
                        79*************************655**********************************999999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.734407496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-6410496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.27E-4410496No hitNo description
SuperFamilySSF474593.01E-10410435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-10411437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-4413502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10474519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-10478509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MEKESSFNAL RELVIGVEWT YRIIWKLELN QRSLICYQSY FNEREATEVD QAQEFQLVYC  60
SRQFATSRPG YAYNAWKQQS SSWWTPQLMQ QVPTDENRDL FLRTLVCFPG RTDDGIGYCV  120
ELATKAQILE TDTLRSFIQG FLYSSIAPHI QEEKVLRKVG GRIEGFPQAS RTVTLPMEPV  180
EHNSPWAMTV LQANANLGQP SVGIQELKYV DFPIHNSQLD LGSIDLPDII GRDSPNRDPS  240
TAFLFSTEWM TAGGKEIAGE GGIHLENLAG TPIDLQLRKK IAIENLDKIL MEIPDEQLQA  300
SPSLQTNGGI LDTTMTSPGS SFHQNSPTGI GKVGQVPPGH SSKSLFRPRR KSSFARLSSS  360
SKRQPMIHNW AKNLAPKIVE LQREAQPLTL PDFNAYESPG YSPHEHYQAV AHKLAERDRR  420
FKFNQRMQTL ISIVPIISKV INRFPKFTYQ VLNISRTDLT ALSLNRVIDT LTNSLVHPQK  480
DKVSVLTSTI AYIHQLTSRI SRLEKGEELP AQPQAPTMET PPPLDAAGVS TLERVNQQTF  540
VSDEAGAGRS SPSWPSVLVD EDDDDSTLII KLEASNNNIS LIQLLNLLLE LDLRIRTLDY  600
VCTDGRFSAK TRVKNSKTSN KEIQVTLQRF LRIKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1346350RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402045.10.0uncharacterized protein LOC112295096 isoform X2
TrEMBLA0A2K1J0D10.0A0A2K1J0D1_PHYPA; Uncharacterized protein
STRINGPP1S19_59V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]